Variant report

Variant	rs2409711
Chromosome Location	chr8:10981644-10981645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTMR9-1	chr8:10980891-10982326	ENSG00000247665
2	lnc-AF131215.3.1-1	chr8:10980891-10982327	ENSG00000254936.3
3	lnc-AF131215.3.1-1	chr8:10980891-10982327	ENSG00000254936.3
4	lnc-AF131215.3.1-1	chr8:10980891-10982327	NONHSAT125036

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2409709	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2898263	1.00[AMR][1000 genomes]
rs56891374	1.00[AMR][1000 genomes]
rs57308044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1027845	chr8:10959666-10995565	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv1019796	chr8:10979442-11010826	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966200-10999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:10980600-10982000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:10981200-10982200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:10981200-10982400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr8:10981200-10982800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:10981400-10982000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:10981400-10982200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:10981400-10982200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr8:10981400-10982400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr8:10981400-10982400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:10981400-10982400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr8:10981400-10982400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:10981400-10982400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr8:10981400-10982400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:10981400-10982400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:10981400-10982400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:10981400-10982800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:10981400-10983000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:10981400-10983000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr8:10981400-10983000	Enhancers	Lung	lung
22	chr8:10981400-10983200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr8:10981400-10983200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:10981600-10981800	Active TSS	Primary B cells from cord blood	blood
25	chr8:10981600-10981800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr8:10981600-10982000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:10981600-10982000	Active TSS	Duodenum Mucosa	Duodenum
28	chr8:10981600-10982200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:10981600-10982200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:10981600-10982200	Active TSS	Primary B cells from peripheral blood	blood
31	chr8:10981600-10982200	Active TSS	Primary T cells fromperipheralblood	blood
32	chr8:10981600-10982200	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr8:10981600-10982200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:10981600-10982200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr8:10981600-10982400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr8:10981600-10982400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr8:10981600-10982600	Weak transcription	Spleen	Spleen
38	chr8:10981600-10982600	Active TSS	GM12878-XiMat	blood
39	chr8:10981600-10982800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:10981600-10983000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:10981600-10983000	Enhancers	Primary monocytes fromperipheralblood	blood

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