Variant report

Variant	rs2414185
Chromosome Location	chr15:53178012-53178013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11070921	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070935	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12900070	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12912619	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12913472	0.84[EUR][1000 genomes]
rs1899734	0.96[EUR][1000 genomes]
rs1899739	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2120447	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165989	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414187	0.96[ASN][1000 genomes]
rs2440331	0.96[ASN][1000 genomes]
rs2456520	0.94[ASN][1000 genomes]
rs61588331	0.82[ASN][1000 genomes]
rs6493597	0.84[EUR][1000 genomes]
rs6493598	0.84[EUR][1000 genomes]
rs73413458	0.97[ASN][1000 genomes]
rs8030817	0.86[EUR][1000 genomes]
rs8032241	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8032248	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv974577	chr15:53176769-53183456	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53165800-53183200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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