Variant report

Variant	rs241521
Chromosome Location	chr14:56559165-56559166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56558435..56560127-chr14:56683877..56686792,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10140006	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1041075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1046596	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10873093	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171339	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2010895	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241513	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241514	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241522	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241549	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241551	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241552	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241554	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241556	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241558	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241561	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs241562	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241564	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241565	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3186565	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs377471	0.82[JPT][hapmap]
rs3850294	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3850295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs387419	0.88[MEX][hapmap]
rs4901637	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61526546	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150067	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7156007	0.83[EUR][1000 genomes]
rs7157298	0.83[EUR][1000 genomes]
rs8004543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs241521	C14orf166	cis	cerebellum	SCAN
rs241521	PELI2	cis	parietal	SCAN
rs241521	FBXO34	cis	cerebellum	SCAN
rs241521	TMX1	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56553800-56559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56555000-56559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:56555200-56559400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:56555200-56563600	Weak transcription	Pancreas	Pancrea
5	chr14:56555600-56559800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:56555600-56560400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:56556000-56559400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:56556000-56559600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:56556000-56560400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:56556200-56559400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:56556200-56559800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:56556200-56559800	Weak transcription	Fetal Lung	lung
13	chr14:56556200-56565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:56556400-56560400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:56557000-56560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:56557600-56559600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:56557600-56560400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:56557800-56563800	Weak transcription	Fetal Brain Female	brain
19	chr14:56558000-56563600	Weak transcription	Fetal Brain Male	brain
20	chr14:56558200-56562200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr14:56558800-56561800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr14:56559000-56559200	Enhancers	Psoas Muscle	Psoas
23	chr14:56559000-56560000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr14:56559000-56561600	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links