Variant report

Variant	rs241550
Chromosome Location	chr14:56546024-56546025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1046597	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2343374	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs241515	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs241516	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241517	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs241519	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs241548	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs241557	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs241559	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs241560	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs242387	0.82[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs242388	0.85[EUR][1000 genomes]
rs3912202	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7151231	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7156007	0.82[ASN][1000 genomes]
rs7156867	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7157298	0.82[ASN][1000 genomes]
rs7157440	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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