Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1046597	0.81[CEU][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2343374	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241515	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241516	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs241517	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs241519	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241548	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs241550	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs241559	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241560	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs242387	0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs242388	0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs3912202	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs395643	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs434713	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7151231	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156007	0.92[ASN][1000 genomes]
rs7156867	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7157298	0.92[ASN][1000 genomes]
rs7157440	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs241557	PELI2	cis	parietal	SCAN
rs241557	C14orf166	cis	cerebellum	SCAN
rs241557	ERO1L	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach
2	chr14:56549400-56554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:56549400-56554200	Weak transcription	Dnd41	blood
4	chr14:56549400-56554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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