Variant report

Variant	rs241562
Chromosome Location	chr14:56551314-56551315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10140006	0.86[EUR][1000 genomes]
rs1041075	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1046596	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10873093	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs171339	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2010895	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241513	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241514	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241520	0.93[ASN][1000 genomes]
rs241521	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241522	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241549	0.84[AMR][1000 genomes]
rs241551	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241552	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241554	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs241556	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241558	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs241561	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241564	0.83[EUR][1000 genomes]
rs241565	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241566	0.92[ASN][1000 genomes]
rs3186565	0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3850294	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3850295	0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4901637	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61526546	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7149660	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7150067	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8004543	0.88[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs241562	PELI2	cis	parietal	SCAN
rs241562	TMX1	cis	cerebellum	SCAN
rs241562	FBXO34	cis	cerebellum	SCAN
rs241562	C14orf166	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach
2	chr14:56549400-56554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:56549400-56554200	Weak transcription	Dnd41	blood
4	chr14:56549400-56554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:56550800-56554000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:56551000-56553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:56551200-56554400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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