Variant report

Variant	rs241564
Chromosome Location	chr14:56551937-56551938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56198273..56199200-chr14:56551636..56552463,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10140006	0.84[EUR][1000 genomes]
rs1041075	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1046596	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10873093	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs171339	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2010895	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241513	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241514	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241521	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241522	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241549	0.86[ASN][1000 genomes]
rs241551	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241552	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241554	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241556	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241558	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241562	0.83[EUR][1000 genomes]
rs241565	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3186565	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3850294	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3850295	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4901637	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61526546	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7149660	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7150067	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8004543	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56541000-56554200	Weak transcription	Gastric	stomach
2	chr14:56549400-56554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:56549400-56554200	Weak transcription	Dnd41	blood
4	chr14:56549400-56554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:56550800-56554000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:56551000-56553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:56551200-56554400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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