Variant report

Variant	rs241565
Chromosome Location	chr14:56554718-56554719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56552357..56554889-chr14:56680041..56682175,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10140006	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1041075	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1046596	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10873093	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs171339	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2010895	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241513	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241514	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241521	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241522	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241549	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs241551	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241552	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241554	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241556	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241558	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs241561	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs241562	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs241564	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3186565	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377471	0.81[JPT][hapmap]
rs3850294	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3850295	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4901637	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61526546	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149660	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150067	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7156007	0.83[EUR][1000 genomes]
rs7157298	0.83[EUR][1000 genomes]
rs8004543	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56553800-56559400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56554000-56555000	Enhancers	Stomach Smooth Muscle	stomach
3	chr14:56554000-56556200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:56554000-56556200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:56554000-56556200	Enhancers	Fetal Lung	lung
6	chr14:56554000-56556200	Enhancers	Fetal Stomach	stomach
7	chr14:56554000-56556200	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:56554000-56556400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:56554000-56557000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:56554000-56558000	Enhancers	Fetal Brain Male	brain
11	chr14:56554200-56555000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:56554200-56555000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:56554200-56555200	Enhancers	Gastric	stomach
14	chr14:56554200-56555200	Enhancers	Pancreas	Pancrea
15	chr14:56554200-56555200	Enhancers	Dnd41	blood
16	chr14:56554200-56555600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:56554200-56557000	Enhancers	Brain Germinal Matrix	brain
18	chr14:56554400-56555000	Flanking Active TSS	Fetal Brain Female	brain
19	chr14:56554400-56555200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr14:56554400-56555200	Enhancers	Fetal Thymus	thymus
21	chr14:56554400-56555600	Enhancers	Stomach Mucosa	stomach
22	chr14:56554400-56556000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr14:56554400-56556200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:56554400-56556600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:56554600-56554800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr14:56554600-56554800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:56554600-56555000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:56554600-56555200	Enhancers	Thymus	Thymus
29	chr14:56554600-56555400	Enhancers	Colon Smooth Muscle	Colon
30	chr14:56554600-56555600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr14:56554600-56555600	Enhancers	Aorta	Aorta
32	chr14:56554600-56556200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr14:56554600-56556200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:56554600-56556200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:56554600-56556400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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