Variant report

Variant	rs2418107
Chromosome Location	chr12:10955357-10955358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55758018	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309916	1.00[AMR][1000 genomes]
rs57629882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060686	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060695	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060696	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060698	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062406	1.00[AMR][1000 genomes]
rs74062410	1.00[AMR][1000 genomes]
rs74062417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10954200-10955800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr12:10954200-10955800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:10954400-10955600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:10954400-10955600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:10954400-10955600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:10954400-10955600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:10954400-10955600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:10954600-10955400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr12:10954600-10955600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:10955000-10955800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:10955200-10955400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr12:10955200-10955600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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