Variant report

Variant	rs2421790
Chromosome Location	chr1:71191807-71191808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1108801	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12022025	0.81[EUR][1000 genomes]
rs12033260	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12046339	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1343786	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1536261	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs1889599	0.87[EUR][1000 genomes]
rs2421783	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2421805	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs34289107	0.81[EUR][1000 genomes]
rs34384777	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4649932	0.88[CHB][hapmap];0.95[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2421790	LRRC40	cis	parietal	SCAN
rs2421790	PTGER3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71184000-71193000	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links