Variant report

Variant	rs2433162
Chromosome Location	chr11:35045357-35045358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1035731	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1425804	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1477562	0.81[AMR][1000 genomes]
rs1477563	0.81[AMR][1000 genomes]
rs1559756	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2433161	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2467603	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2469910	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2553787	0.81[EUR][1000 genomes]
rs2553788	0.81[AMR][1000 genomes]
rs2553789	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553790	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553791	0.81[AMR][1000 genomes]
rs2553792	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553793	0.81[AMR][1000 genomes]
rs2553794	0.81[AMR][1000 genomes]
rs2553795	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2553797	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553800	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2553801	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2553802	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2553803	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2553805	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2553806	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2732520	0.81[EUR][1000 genomes]
rs2732521	0.81[AMR][1000 genomes]
rs2732522	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2732524	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2732526	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732527	0.85[EUR][1000 genomes]
rs2732528	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732529	0.90[EUR][1000 genomes]
rs2785153	0.81[EUR][1000 genomes]
rs2785154	0.81[EUR][1000 genomes]
rs2785155	0.81[EUR][1000 genomes]
rs2785156	0.81[EUR][1000 genomes]
rs2785157	0.81[AMR][1000 genomes]
rs2785159	0.81[AMR][1000 genomes]
rs2785160	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785161	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2785162	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2785163	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785166	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785167	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2785168	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2785169	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs471450	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs496623	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs497476	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs532282	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs536864	0.81[AMR][1000 genomes]
rs603820	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs622235	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs663993	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs678137	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7479679	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv897215	chr11:35009233-35048359	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35028600-35051600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:35033600-35051200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:35037200-35051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:35039800-35059200	Weak transcription	Pancreas	Pancrea

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