Variant report

Variant	rs2433217
Chromosome Location	chr15:52175676-52175677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:52175539-52176164	SK-N-SH	brain:	n/a	n/a
2	PBX3	chr15:52175524-52176016	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52121304..52123293-chr15:52174334..52178063,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207484	TF binding region
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 274 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:272)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap]
rs1025184	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1035739	0.88[EUR][1000 genomes]
rs10444824	0.87[EUR][1000 genomes]
rs10444825	0.86[EUR][1000 genomes]
rs10775145	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs10851503	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10851504	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11049	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap]
rs11070866	0.80[EUR][1000 genomes]
rs11070867	0.81[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs11070869	0.86[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs1135871	0.83[EUR][1000 genomes]
rs11630253	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs11631858	0.87[EUR][1000 genomes]
rs11636345	0.87[GIH][hapmap];0.87[TSI][hapmap]
rs11636869	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11638677	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638820	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs12050524	0.88[EUR][1000 genomes]
rs12591672	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12592771	0.88[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901638	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902346	0.83[EUR][1000 genomes]
rs12902930	0.93[ASN][1000 genomes]
rs12903707	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs12903781	0.88[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs12904413	0.86[EUR][1000 genomes]
rs12904900	0.86[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs12908327	0.92[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12912928	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12913583	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12913850	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12917133	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs1350174	0.81[TSI][hapmap]
rs17526463	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17539905	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17610862	0.86[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs17612102	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17612123	0.90[EUR][1000 genomes]
rs17705817	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1811326	0.85[GIH][hapmap];0.87[TSI][hapmap]
rs1840708	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1902430	0.81[TSI][hapmap]
rs1972689	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014638	0.85[GIH][hapmap];0.87[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs2034857	0.86[GIH][hapmap];0.85[TSI][hapmap]
rs2034858	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2052705	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2077743	0.81[TSI][hapmap]
rs2114191	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2251135	0.84[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2303443	0.88[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes]
rs2414122	0.83[ASW][hapmap];0.84[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2433222	0.96[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436657	0.96[EUR][1000 genomes]
rs2436658	0.94[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2448947	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2448948	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448949	0.92[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448951	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470590	0.83[EUR][1000 genomes]
rs2470591	0.84[EUR][1000 genomes]
rs2470599	0.98[ASN][1000 genomes]
rs2470600	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470601	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470602	0.94[EUR][1000 genomes]
rs2470603	0.88[EUR][1000 genomes]
rs2470604	0.83[EUR][1000 genomes]
rs2470605	0.86[EUR][1000 genomes]
rs2470607	0.87[EUR][1000 genomes]
rs2470608	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470610	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470611	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470615	0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2470616	0.93[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap]
rs2470618	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2554322	0.94[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554336	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs2554337	0.84[EUR][1000 genomes]
rs2554342	0.95[EUR][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs2554350	0.96[EUR][1000 genomes]
rs2554353	0.94[EUR][1000 genomes]
rs2570224	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2570228	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2570238	0.94[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs2570240	0.91[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570258	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs2570263	0.95[EUR][1000 genomes]
rs2570268	0.95[EUR][1000 genomes]
rs2570269	0.94[EUR][1000 genomes]
rs2570271	0.94[EUR][1000 genomes]
rs2570275	0.94[EUR][1000 genomes]
rs2593168	0.96[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs2593177	0.95[EUR][1000 genomes]
rs2593179	0.96[EUR][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.96[EUR][1000 genomes]
rs2593183	0.96[EUR][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs2593194	0.84[EUR][1000 genomes]
rs2593198	0.94[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593204	0.88[EUR][1000 genomes]
rs2623243	0.94[EUR][1000 genomes]
rs2623244	0.94[EUR][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2623266	0.96[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs2623279	0.96[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623284	0.96[EUR][1000 genomes]
rs2623285	0.96[EUR][1000 genomes]
rs2623286	0.96[EUR][1000 genomes]
rs2623288	0.95[EUR][1000 genomes]
rs2623289	0.94[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912188	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2912189	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912190	0.83[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2916170	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916171	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916172	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916175	0.85[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916176	0.92[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916177	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2921951	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2921953	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2921957	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929422	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2929425	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs2929428	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959289	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2959291	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959292	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959293	0.84[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959295	0.88[ASN][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959300	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959302	0.93[EUR][1000 genomes]
rs2959304	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959305	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959306	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959307	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110551	0.85[EUR][1000 genomes]
rs3110553	0.83[EUR][1000 genomes]
rs34504520	0.87[EUR][1000 genomes]
rs34842090	0.84[EUR][1000 genomes]
rs35270232	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35823585	0.88[EUR][1000 genomes]
rs36087956	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3751596	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3794535	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs4238383	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs4365237	0.82[EUR][1000 genomes]
rs4774602	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs4775983	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs56148956	0.87[EUR][1000 genomes]
rs56185947	0.88[EUR][1000 genomes]
rs62015190	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62016192	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6493523	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs6493525	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67895020	0.88[AMR][1000 genomes]
rs689884	0.83[GIH][hapmap];0.83[TSI][hapmap]
rs7162176	0.80[EUR][1000 genomes]
rs7162554	0.94[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164961	0.87[EUR][1000 genomes]
rs7165585	0.81[TSI][hapmap]
rs7168659	1.00[CEU][hapmap]
rs7170091	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7170910	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7171516	0.88[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7175017	0.82[EUR][1000 genomes]
rs7178166	0.82[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7178940	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7181553	0.83[GIH][hapmap];0.81[TSI][hapmap]
rs726158	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs72732914	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024585	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8025069	0.82[EUR][1000 genomes]
rs8026521	0.89[EUR][1000 genomes]
rs8027721	0.81[EUR][1000 genomes]
rs8028258	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs8028486	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs8029036	0.90[EUR][1000 genomes]
rs8033433	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8035126	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.90[GIH][hapmap]
rs8038344	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040975	0.82[EUR][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs990665	0.96[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2433217	SCG3	cis	Frontal Cortex	GTEx
rs2433217	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52141800-52176200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:52145800-52176600	Weak transcription	Psoas Muscle	Psoas
3	chr15:52148200-52176200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:52153800-52178000	Weak transcription	Brain Germinal Matrix	brain
5	chr15:52155600-52192000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:52156000-52211000	Weak transcription	Brain Substantia Nigra	brain
7	chr15:52157800-52178000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:52161600-52176000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:52163000-52186800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:52163200-52184200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:52163400-52181400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:52163400-52186200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:52165200-52181800	Weak transcription	Esophagus	oesophagus
14	chr15:52165400-52175800	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:52165800-52183600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:52167200-52176400	Weak transcription	Aorta	Aorta
17	chr15:52167200-52176600	Weak transcription	Colonic Mucosa	Colon
18	chr15:52167200-52186200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:52167200-52210800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:52167600-52177000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:52167600-52177000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:52167600-52192000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:52167600-52199600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:52167800-52176800	Weak transcription	Dnd41	blood
25	chr15:52167800-52181400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:52167800-52188600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:52168200-52183200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:52168400-52176000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:52168600-52188600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:52168800-52183800	Weak transcription	Fetal Thymus	thymus
31	chr15:52169200-52179600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:52169400-52179800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:52169800-52181200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:52170400-52178000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:52170400-52179800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:52170400-52186400	Weak transcription	Thymus	Thymus
37	chr15:52170400-52186600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:52170600-52175800	Weak transcription	Fetal Stomach	stomach
39	chr15:52170600-52175800	Weak transcription	Right Atrium	heart
40	chr15:52170600-52176400	Weak transcription	Gastric	stomach
41	chr15:52170600-52176400	Weak transcription	Spleen	Spleen
42	chr15:52170600-52176800	Weak transcription	GM12878-XiMat	blood
43	chr15:52170600-52178200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:52170600-52181800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:52170600-52184800	Weak transcription	Lung	lung
46	chr15:52170600-52186000	Weak transcription	Left Ventricle	heart
47	chr15:52170800-52176400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:52171000-52175800	Weak transcription	Primary B cells from cord blood	blood
49	chr15:52171000-52175800	Weak transcription	Small Intestine	intestine
50	chr15:52171000-52176400	Weak transcription	Brain Anterior Caudate	brain

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