Variant report

Variant	rs2433221
Chromosome Location	chr15:52203664-52203665
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52189944..52192659-chr15:52203405..52206399,2	MCF-7	breast:
2	chr15:52202265..52204898-chr15:52246351..52248746,2	MCF-7	breast:
3	chr15:52194540..52196251-chr15:52201951..52203971,2	K562	blood:

Variant related genes	Relation type
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 269 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs1001690	0.89[CEU][hapmap]
rs1025184	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs1035737	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1035739	0.89[EUR][1000 genomes]
rs10444824	0.84[EUR][1000 genomes]
rs10444825	0.83[EUR][1000 genomes]
rs10775145	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs10851503	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10851504	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11049	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070865	0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[TSI][hapmap]
rs11070868	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11070869	0.84[EUR][1000 genomes]
rs1133883	0.96[CEU][hapmap]
rs1135871	0.84[EUR][1000 genomes]
rs11630253	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630579	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630943	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11631858	0.83[EUR][1000 genomes]
rs11636345	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs11636869	0.87[EUR][1000 genomes]
rs11637876	0.86[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs11638677	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11638820	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs12050524	0.83[EUR][1000 genomes]
rs12591672	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592771	0.89[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs12593708	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12901638	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12902346	0.84[EUR][1000 genomes]
rs12902930	0.86[ASN][1000 genomes]
rs12903707	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs12903781	0.89[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs12904413	0.84[EUR][1000 genomes]
rs12904900	0.84[EUR][1000 genomes]
rs12905283	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs12908327	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12912928	0.87[EUR][1000 genomes]
rs12913583	0.86[EUR][1000 genomes]
rs12913850	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12915015	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12915568	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12917133	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1350174	0.83[TSI][hapmap]
rs17526463	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17526760	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17539905	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17610862	0.84[EUR][1000 genomes]
rs17611193	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17612102	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17612123	0.91[EUR][1000 genomes]
rs17705817	0.83[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1811326	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs1840708	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap]
rs1863430	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1902430	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs1972689	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1991267	0.82[CEU][hapmap]
rs2006773	0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs2007335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007355	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2009972	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs2010026	0.96[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2011995	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2014638	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2034856	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs2034857	0.82[GIH][hapmap];0.87[TSI][hapmap]
rs2034858	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2052705	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs2052706	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs2052708	0.96[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052709	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2077743	0.83[TSI][hapmap]
rs2114191	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2241503	0.92[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs2251135	0.85[EUR][1000 genomes]
rs2252606	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2252831	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2253116	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2258248	0.82[CEU][hapmap]
rs2303443	0.80[CHB][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes]
rs2414122	0.80[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2433217	0.96[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2433222	0.97[EUR][1000 genomes]
rs2436655	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2436656	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436657	0.97[EUR][1000 genomes]
rs2436658	0.95[EUR][1000 genomes]
rs2436660	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436662	0.92[EUR][1000 genomes]
rs2441780	0.81[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448946	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2448947	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448948	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2448949	0.93[EUR][1000 genomes]
rs2448950	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2448951	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2448953	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470590	0.84[EUR][1000 genomes]
rs2470591	0.85[EUR][1000 genomes]
rs2470599	0.91[ASN][1000 genomes]
rs2470600	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470601	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470602	0.95[EUR][1000 genomes]
rs2470603	0.89[EUR][1000 genomes]
rs2470604	0.84[EUR][1000 genomes]
rs2470605	0.87[EUR][1000 genomes]
rs2470607	0.88[EUR][1000 genomes]
rs2470608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470610	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470611	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470612	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470615	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs2470616	0.94[EUR][1000 genomes]
rs2470617	0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2470618	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554314	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2554322	0.95[EUR][1000 genomes]
rs2554327	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2554328	0.92[EUR][1000 genomes]
rs2554336	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2554337	0.85[EUR][1000 genomes]
rs2554342	0.96[EUR][1000 genomes]
rs2554348	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2554349	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2554350	0.97[EUR][1000 genomes]
rs2554353	0.92[EUR][1000 genomes]
rs2570224	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2570228	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2570238	0.91[EUR][1000 genomes]
rs2570239	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2570240	0.93[EUR][1000 genomes]
rs2570241	0.96[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2570248	0.92[EUR][1000 genomes]
rs2570258	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2570263	0.96[EUR][1000 genomes]
rs2570268	0.96[EUR][1000 genomes]
rs2570269	0.95[EUR][1000 genomes]
rs2570271	0.95[EUR][1000 genomes]
rs2570275	0.95[EUR][1000 genomes]
rs2593168	0.97[EUR][1000 genomes]
rs2593170	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2593173	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2593177	0.95[EUR][1000 genomes]
rs2593179	0.96[EUR][1000 genomes]
rs2593181	0.82[CEU][hapmap]
rs2593182	0.97[EUR][1000 genomes]
rs2593183	0.97[EUR][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593187	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593188	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2593194	0.85[EUR][1000 genomes]
rs2593198	0.95[EUR][1000 genomes]
rs2593199	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593202	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593204	0.89[EUR][1000 genomes]
rs2623243	0.95[EUR][1000 genomes]
rs2623244	0.95[EUR][1000 genomes]
rs2623255	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2623266	0.97[EUR][1000 genomes]
rs2623271	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2623279	0.97[EUR][1000 genomes]
rs2623281	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623282	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2623283	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs2623284	0.97[EUR][1000 genomes]
rs2623285	0.97[EUR][1000 genomes]
rs2623286	0.97[EUR][1000 genomes]
rs2623288	0.96[EUR][1000 genomes]
rs2623289	0.95[EUR][1000 genomes]
rs2912186	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2912187	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2912188	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2912189	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2912190	0.81[EUR][1000 genomes]
rs2916169	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2916170	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916172	0.81[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916175	0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916176	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916177	0.81[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2921951	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921953	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921957	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929422	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929423	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929424	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929425	0.81[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929426	0.93[ASW][hapmap];0.96[CEU][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2929428	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959285	0.87[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959289	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959291	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959292	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959293	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959295	0.83[ASN][1000 genomes]
rs2959296	0.80[CEU][hapmap]
rs2959298	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959299	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959300	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959302	0.94[EUR][1000 genomes]
rs2959304	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2959305	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959306	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2959307	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3110551	0.86[EUR][1000 genomes]
rs3110553	0.84[EUR][1000 genomes]
rs34504520	0.84[EUR][1000 genomes]
rs34842090	0.85[EUR][1000 genomes]
rs35270232	0.86[EUR][1000 genomes]
rs35823585	0.86[EUR][1000 genomes]
rs36087956	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3751596	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs3794532	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs3794535	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs4238383	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs4365237	0.80[EUR][1000 genomes]
rs4774602	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs4775983	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs56148956	0.84[EUR][1000 genomes]
rs56185947	0.84[EUR][1000 genomes]
rs62015190	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62016192	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493520	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6493521	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6493523	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs6493525	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493526	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67895020	0.85[AMR][1000 genomes]
rs689884	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs7162554	0.95[EUR][1000 genomes]
rs7162925	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163541	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7164961	0.84[EUR][1000 genomes]
rs7165585	0.83[TSI][hapmap]
rs7168659	0.96[CEU][hapmap]
rs7170091	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7170910	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7171516	0.84[EUR][1000 genomes]
rs7171796	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7174497	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs7174808	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs7178166	0.80[EUR][1000 genomes]
rs7178561	0.96[CEU][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs7178776	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7178940	0.84[EUR][1000 genomes]
rs7179599	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7181540	0.96[CEU][hapmap]
rs7181553	0.84[GIH][hapmap];0.83[TSI][hapmap]
rs726158	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs72732914	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024585	0.87[EUR][1000 genomes]
rs8025069	0.80[EUR][1000 genomes]
rs8026521	0.86[EUR][1000 genomes]
rs8028258	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs8028486	0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028922	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs8029036	0.91[EUR][1000 genomes]
rs8033433	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8035126	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8035173	0.89[CEU][hapmap];0.86[GIH][hapmap]
rs8038344	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8040975	0.80[EUR][1000 genomes]
rs8040991	0.92[EUR][1000 genomes]
rs990665	0.97[EUR][1000 genomes]
rs9944235	0.96[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2433221	SCG3	cis	Frontal Cortex	GTEx
rs2433221	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52156000-52211000	Weak transcription	Brain Substantia Nigra	brain
2	chr15:52167200-52210800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:52171000-52210800	Weak transcription	Right Ventricle	heart
4	chr15:52172800-52208200	Weak transcription	Brain Angular Gyrus	brain
5	chr15:52177200-52213600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:52178800-52216600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:52179600-52203800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:52179600-52259800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:52179800-52218600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:52180400-52218200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:52181200-52221000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:52183200-52223000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:52184400-52205000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr15:52185800-52204200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:52186200-52204200	Strong transcription	Primary B cells from cord blood	blood
16	chr15:52186400-52204200	Strong transcription	Placenta	Placenta
17	chr15:52186400-52219000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:52187800-52212000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:52191000-52222800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:52192800-52213600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:52193400-52208200	Weak transcription	Esophagus	oesophagus
22	chr15:52193400-52209800	Weak transcription	HSMMtube	muscle
23	chr15:52193400-52210800	Weak transcription	Brain Germinal Matrix	brain
24	chr15:52193400-52227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:52193400-52232800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:52193600-52233600	Weak transcription	Fetal Brain Male	brain
27	chr15:52193800-52210400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:52193800-52216200	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:52194200-52228200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:52194200-52231600	Weak transcription	Psoas Muscle	Psoas
31	chr15:52194400-52205400	Weak transcription	Colonic Mucosa	Colon
32	chr15:52194400-52209400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:52194400-52236800	Weak transcription	Fetal Kidney	kidney
34	chr15:52194400-52239000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:52194600-52210600	Weak transcription	Brain Anterior Caudate	brain
36	chr15:52194800-52210400	Weak transcription	Fetal Brain Female	brain
37	chr15:52195200-52205400	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:52196200-52234000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:52197000-52209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:52197000-52234200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:52197000-52234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:52197200-52208000	Weak transcription	Spleen	Spleen
43	chr15:52197600-52209000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:52197600-52210800	Weak transcription	Small Intestine	intestine
45	chr15:52198000-52203800	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:52198000-52205200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:52198200-52203800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:52198400-52204000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:52198400-52204400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:52198400-52219000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Variant report

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