Variant report

Variant	rs2434983
Chromosome Location	chr11:93502702-93502703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93500273..93502997-chr11:93515833..93518009,2	MCF-7	breast:
2	chr11:93473875..93477251-chr11:93500933..93504906,6	K562	blood:
3	chr11:93475114..93477251-chr11:93501701..93505536,3	K562	blood:

Variant related genes	Relation type
ENSG00000166012	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000042429	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10741468	1.00[EUR][1000 genomes]
rs10765632	1.00[EUR][1000 genomes]
rs10831087	1.00[EUR][1000 genomes]
rs12281968	0.86[AFR][1000 genomes]
rs16919376	1.00[TSI][hapmap]
rs16919390	1.00[TSI][hapmap]
rs16919393	1.00[TSI][hapmap]
rs16919410	1.00[TSI][hapmap]
rs16919459	1.00[TSI][hapmap]
rs1939566	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4284369	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4595504	1.00[EUR][1000 genomes]
rs584474	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592526	0.81[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604414	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607826	0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs614003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs622231	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs624883	0.84[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483257	1.00[EUR][1000 genomes]
rs6483263	1.00[EUR][1000 genomes]
rs653934	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs655208	0.91[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs657177	0.81[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs666470	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7103189	1.00[TSI][hapmap]
rs7109799	1.00[TSI][hapmap]
rs7119915	1.00[TSI][hapmap]
rs7120747	1.00[TSI][hapmap]
rs7123801	1.00[EUR][1000 genomes]
rs73561150	1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	1.00[EUR][1000 genomes]
rs7939434	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93478800-93508200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93490200-93503200	Weak transcription	K562	blood
3	chr11:93492200-93503600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:93492200-93505400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:93492200-93505400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:93492200-93506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:93492200-93507400	Weak transcription	Aorta	Aorta
8	chr11:93492200-93516600	Weak transcription	Psoas Muscle	Psoas
9	chr11:93492200-93516800	Weak transcription	Right Ventricle	heart
10	chr11:93492800-93503200	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:93493400-93505400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:93493800-93507200	Weak transcription	Ovary	ovary
13	chr11:93494000-93506200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:93495200-93505000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:93496000-93513600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:93497600-93505400	Weak transcription	Brain Germinal Matrix	brain
17	chr11:93497600-93506000	Weak transcription	Fetal Stomach	stomach
18	chr11:93497800-93504600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:93498000-93516600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:93498200-93505600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:93498600-93516600	Weak transcription	Hela-S3	cervix
22	chr11:93498800-93503800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:93498800-93505400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:93498800-93506000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:93499000-93505200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:93499000-93505400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:93499000-93505800	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:93499200-93505600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:93499200-93516600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:93499600-93506400	Weak transcription	Primary T cells from cord blood	blood
31	chr11:93499800-93505400	Weak transcription	Fetal Brain Female	brain
32	chr11:93499800-93516600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:93500800-93505200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:93501000-93505200	Weak transcription	Fetal Intestine Small	intestine
35	chr11:93501800-93504200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:93502000-93503800	Enhancers	HepG2	liver
37	chr11:93502000-93504200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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