Variant report

Variant	rs2436639
Chromosome Location	chr12:51556086-51556087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51554796..51557300-chr12:51565911..51568570,2	K562	blood:
2	chr12:51554796..51556370-chr12:51565911..51567778,2	K562	blood:
3	chr12:51546648..51549311-chr12:51552488..51556215,3	K562	blood:
4	chr12:51476081..51477615-chr12:51555734..51558069,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135457	Chromatin interaction
ENSG00000110925	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10735830	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2436649	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2640508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2640517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2640519	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2640524	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2640529	0.80[AFR][1000 genomes]
rs2730658	1.00[AMR][1000 genomes]
rs4768966	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580786	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	esv2762980	chr12:51527963-51561056	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51503200-51560200	Weak transcription	Right Ventricle	heart
2	chr12:51504800-51563400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:51511400-51558800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr12:51513000-51565400	Weak transcription	Fetal Lung	lung
5	chr12:51519000-51561600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:51519000-51565000	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:51519000-51565200	Weak transcription	Left Ventricle	heart
8	chr12:51519000-51565200	Weak transcription	Pancreas	Pancrea
9	chr12:51519000-51565800	Weak transcription	Esophagus	oesophagus
10	chr12:51519200-51559600	Weak transcription	Lung	lung
11	chr12:51519200-51563800	Weak transcription	Fetal Brain Female	brain
12	chr12:51519200-51565000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr12:51519400-51565200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:51521600-51565200	Weak transcription	HSMM	muscle
15	chr12:51526000-51558800	Weak transcription	GM12878-XiMat	blood
16	chr12:51526800-51556400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:51527400-51565200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:51530600-51564200	Weak transcription	Fetal Muscle Leg	muscle
19	chr12:51531200-51563400	Weak transcription	Hela-S3	cervix
20	chr12:51532000-51565000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:51532400-51564000	Weak transcription	Primary T cells from cord blood	blood
22	chr12:51532600-51562000	Weak transcription	Ovary	ovary
23	chr12:51532600-51562800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr12:51532600-51564800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:51532600-51565200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:51532800-51563600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:51533000-51563200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr12:51533200-51561400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:51533200-51561400	Weak transcription	Placenta	Placenta
30	chr12:51533200-51564800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:51533400-51560200	Weak transcription	Dnd41	blood
32	chr12:51533600-51564800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr12:51533600-51565000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:51534600-51564200	Weak transcription	Fetal Intestine Large	intestine
35	chr12:51539600-51565000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr12:51539800-51556800	Weak transcription	Fetal Stomach	stomach
37	chr12:51539800-51561000	Weak transcription	Aorta	Aorta
38	chr12:51540000-51560200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr12:51540200-51557600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:51540800-51557800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr12:51540800-51564800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr12:51541000-51560200	Weak transcription	Primary B cells from cord blood	blood
43	chr12:51543200-51565200	Weak transcription	Psoas Muscle	Psoas
44	chr12:51545000-51558800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr12:51545000-51564200	Weak transcription	Brain Germinal Matrix	brain
46	chr12:51545000-51565000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr12:51545000-51565000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr12:51549000-51557400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:51550200-51563200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr12:51550400-51558600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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