Variant report

Variant	rs2440331
Chromosome Location	chr15:53172692-53172693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11070921	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs12101773	0.85[MEX][hapmap]
rs16965332	0.85[MEX][hapmap]
rs17544163	0.81[CEU][hapmap]
rs17544177	0.81[CEU][hapmap]
rs1899739	0.95[ASN][1000 genomes]
rs2120447	0.96[ASN][1000 genomes]
rs2165989	0.95[ASN][1000 genomes]
rs2414185	0.96[ASN][1000 genomes]
rs2414187	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2456520	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[ASN][1000 genomes]
rs61588331	0.84[ASN][1000 genomes]
rs73413458	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53165800-53183200	Weak transcription	Pancreas	Pancrea
2	chr15:53168000-53172800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53172200-53172800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr15:53172200-53172800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:53172600-53173200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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