Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10832904	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11024553	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11024561	0.87[AMR][1000 genomes]
rs11024562	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11024563	0.80[AMR][1000 genomes]
rs11024566	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11024574	0.89[EUR][1000 genomes]
rs11024576	0.88[EUR][1000 genomes]
rs11024577	0.88[EUR][1000 genomes]
rs12361253	0.89[EUR][1000 genomes]
rs12364058	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12364776	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12791694	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1915391	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2445225	0.83[AMR][1000 genomes]
rs2445226	0.83[AMR][1000 genomes]
rs2460831	0.83[AMR][1000 genomes]
rs2468779	0.86[AMR][1000 genomes]
rs2468790	0.84[AMR][1000 genomes]
rs2468856	0.84[AMR][1000 genomes]
rs4757627	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56310011	0.86[AMR][1000 genomes]
rs72881516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18223400-18226000	Weak transcription	Spleen	Spleen

Quick Search: