Variant report

Variant	rs2449302
Chromosome Location	chr1:225249174-225249175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1078794	1.00[AMR][1000 genomes]
rs1395115	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1580956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16856828	0.83[AMR][1000 genomes]
rs2449262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449264	1.00[AMR][1000 genomes]
rs2449265	1.00[AMR][1000 genomes]
rs2449267	1.00[AMR][1000 genomes]
rs2449268	1.00[AMR][1000 genomes]
rs2449270	1.00[AMR][1000 genomes]
rs2449271	1.00[AMR][1000 genomes]
rs2449272	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449273	0.82[AFR][1000 genomes]
rs2449274	0.82[AFR][1000 genomes]
rs2449275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449276	0.81[AFR][1000 genomes]
rs2449277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449280	0.81[AFR][1000 genomes]
rs2449283	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449289	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449294	1.00[AMR][1000 genomes]
rs2449309	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2449311	0.82[AFR][1000 genomes]
rs2449312	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449313	0.82[AFR][1000 genomes]
rs2449314	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449317	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449321	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456335	0.82[AFR][1000 genomes]
rs2456338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456339	0.82[AFR][1000 genomes]
rs2456340	0.82[AFR][1000 genomes]
rs2456343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456346	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2456352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489299	1.00[AMR][1000 genomes]
rs2489307	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489309	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489315	1.00[AMR][1000 genomes]
rs2489316	1.00[AMR][1000 genomes]
rs2489317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489318	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489321	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489323	1.00[AMR][1000 genomes]
rs2489326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489329	1.00[AMR][1000 genomes]
rs2489331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489334	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489335	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489340	1.00[AMR][1000 genomes]
rs2489342	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489345	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489347	0.92[AMR][1000 genomes]
rs2489349	1.00[AMR][1000 genomes]
rs2489350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489351	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489354	0.91[AMR][1000 genomes]
rs2489356	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489357	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489358	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2489360	1.00[AMR][1000 genomes]
rs2501065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501079	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501080	0.91[AMR][1000 genomes]
rs2501088	1.00[AMR][1000 genomes]
rs2501104	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501123	0.80[AFR][1000 genomes]
rs2501124	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501136	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501137	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2501142	1.00[AMR][1000 genomes]
rs2501144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501148	1.00[AMR][1000 genomes]
rs2501150	1.00[AMR][1000 genomes]
rs2501152	1.00[AMR][1000 genomes]
rs2501157	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2516334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2929627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2929629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2929632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2939367	0.84[AFR][1000 genomes]
rs3128647	0.83[AMR][1000 genomes]
rs6426164	1.00[AMR][1000 genomes]
rs6693680	0.91[AMR][1000 genomes]
rs9426101	0.91[AMR][1000 genomes]
rs9426103	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9426104	0.80[AFR][1000 genomes]
rs9426147	1.00[AMR][1000 genomes]
rs9426156	1.00[AMR][1000 genomes]
rs9426159	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1004856	chr1:225228287-225271137	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv526708	chr1:225229866-225273248	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1808493	chr1:225232264-225267066	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3359355	chr1:225247629-225249677	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225248800-225249400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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