Variant report

Variant	rs2451236
Chromosome Location	chr7:137856592-137856593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1373675	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2440808	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2450848	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2718124	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2718126	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2718128	0.85[AMR][1000 genomes]
rs61311213	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137852400-137857000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:137855000-137857800	Weak transcription	Primary T cells from cord blood	blood
3	chr7:137855200-137857800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:137855600-137857000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:137855800-137857200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:137856000-137856600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:137856000-137857200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:137856400-137856800	Enhancers	GM12878-XiMat	blood
9	chr7:137856400-137857200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:137856400-137857600	Weak transcription	Thymus	Thymus
11	chr7:137856400-137857800	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links