Variant report

Variant	rs2451908
Chromosome Location	chr11:76532820-76532821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1149577	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1149626	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1224951	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1224952	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1225127	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1225129	0.80[EUR][1000 genomes]
rs1225131	0.80[EUR][1000 genomes]
rs1225132	0.80[EUR][1000 genomes]
rs1225134	0.80[EUR][1000 genomes]
rs1225135	0.80[EUR][1000 genomes]
rs1225136	0.80[EUR][1000 genomes]
rs1225137	0.80[EUR][1000 genomes]
rs1225139	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1225140	0.80[EUR][1000 genomes]
rs1225141	0.80[EUR][1000 genomes]
rs1225147	0.80[EUR][1000 genomes]
rs1234832	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1235157	0.80[EUR][1000 genomes]
rs1660579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76531600-76533600	Weak transcription	A549	lung
2	chr11:76531600-76534400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:76531800-76533400	Weak transcription	K562	blood
4	chr11:76531800-76533400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:76531800-76533600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:76531800-76534400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:76531800-76534600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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