Variant report

Variant	rs2454210
Chromosome Location	chr15:76314197-76314198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76301816..76304344-chr15:76313829..76315747,2	K562	blood:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap]
rs13379955	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1394122	1.00[CEU][hapmap]
rs1498196	1.00[CEU][hapmap]
rs1498198	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1503955	1.00[CEU][hapmap]
rs1562403	1.00[CEU][hapmap]
rs1695365	1.00[CEU][hapmap]
rs16967747	1.00[CEU][hapmap]
rs170830	1.00[CEU][hapmap]
rs1910510	1.00[CEU][hapmap]
rs2133408	1.00[CEU][hapmap]
rs2133409	1.00[CEU][hapmap]
rs2133410	1.00[CEU][hapmap]
rs2405578	1.00[CEU][hapmap]
rs2441928	1.00[CEU][hapmap]
rs2454209	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2454212	1.00[CEU][hapmap]
rs2454470	1.00[CEU][hapmap]
rs2454472	1.00[CEU][hapmap]
rs2455897	1.00[CEU][hapmap]
rs2460796	1.00[CEU][hapmap]
rs2460801	1.00[CEU][hapmap]
rs2593275	1.00[CEU][hapmap]
rs2648435	1.00[CEU][hapmap]
rs2648437	1.00[CEU][hapmap]
rs2655137	1.00[CEU][hapmap]
rs2947239	1.00[CEU][hapmap]
rs2959851	1.00[CEU][hapmap]
rs334940	1.00[CEU][hapmap]
rs334941	1.00[CEU][hapmap]
rs334947	0.89[YRI][hapmap]
rs334951	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs335674	1.00[CEU][hapmap]
rs335675	1.00[CEU][hapmap]
rs335678	1.00[CEU][hapmap]
rs335679	1.00[CEU][hapmap]
rs335684	1.00[CEU][hapmap]
rs335687	1.00[CEU][hapmap]
rs335713	1.00[CEU][hapmap]
rs335724	1.00[CEU][hapmap]
rs335725	1.00[CEU][hapmap]
rs335726	1.00[CEU][hapmap]
rs335728	1.00[CEU][hapmap]
rs335729	1.00[CEU][hapmap]
rs335732	1.00[CEU][hapmap]
rs335733	1.00[CEU][hapmap]
rs7173697	1.00[CEU][hapmap]
rs7174280	1.00[CEU][hapmap]
rs7174365	1.00[CEU][hapmap]
rs7177048	1.00[CEU][hapmap]
rs7181550	1.00[CEU][hapmap]
rs7182720	1.00[CEU][hapmap]
rs8030102	1.00[CEU][hapmap]
rs8030469	1.00[CEU][hapmap]
rs8033005	1.00[CEU][hapmap]
rs8034430	1.00[CEU][hapmap]
rs8035611	1.00[CEU][hapmap]
rs8036952	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs974718	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2454210	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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