Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53139577..53141179-chr15:53147410..53150139,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12232305	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16965222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17709181	0.91[ASN][1000 genomes]
rs2120440	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2120441	0.81[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2440356	0.92[EUR][1000 genomes]
rs2456510	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28415452	0.90[ASN][1000 genomes]
rs28449533	0.93[ASN][1000 genomes]
rs28489650	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28556805	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28566485	0.88[ASN][1000 genomes]
rs28624935	0.84[ASN][1000 genomes]
rs28663272	1.00[EUR][1000 genomes]
rs28713382	0.91[ASN][1000 genomes]
rs56346629	0.88[ASN][1000 genomes]
rs56710422	0.84[ASN][1000 genomes]
rs57960122	0.85[ASN][1000 genomes]
rs58028943	0.86[ASN][1000 genomes]
rs60407782	0.84[ASN][1000 genomes]
rs60882420	0.84[ASN][1000 genomes]
rs61364465	0.88[ASN][1000 genomes]
rs6493586	0.90[ASN][1000 genomes]
rs7176412	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs731607	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53147000-53149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53148400-53151400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53148600-53151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53148800-53149800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:53148800-53149800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:53148800-53149800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:53148800-53149800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:53148800-53150000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr15:53148800-53150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:53148800-53150600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr15:53148800-53151000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:53149200-53149600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:53149200-53149600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr15:53149200-53149600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:53149200-53151400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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