Variant report

Variant	rs2456520
Chromosome Location	chr15:53173116-53173117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11070921	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12101773	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16965329	0.85[MEX][hapmap];1.00[TSI][hapmap]
rs16965332	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1899739	0.93[ASN][1000 genomes]
rs2120441	1.00[TSI][hapmap]
rs2120447	0.94[ASN][1000 genomes]
rs2165989	0.93[ASN][1000 genomes]
rs2414185	0.94[ASN][1000 genomes]
rs2414187	0.96[ASN][1000 genomes]
rs2440331	0.98[ASN][1000 genomes]
rs61588331	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7176412	1.00[TSI][hapmap]
rs73413458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53165800-53183200	Weak transcription	Pancreas	Pancrea
2	chr15:53172600-53173200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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