Variant report

Variant	rs2456571
Chromosome Location	chr11:93692858-93692859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93687985..93689849-chr11:93692203..93693783,2	K562	blood:
2	chr11:93684701..93687298-chr11:93690286..93693320,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10466334	0.88[ASN][1000 genomes]
rs10466335	0.88[ASN][1000 genomes]
rs10501809	0.89[ASN][1000 genomes]
rs10501810	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10765647	0.88[ASN][1000 genomes]
rs10831147	0.88[ASN][1000 genomes]
rs10831148	0.88[ASN][1000 genomes]
rs11020601	0.88[ASN][1000 genomes]
rs11020603	0.90[ASN][1000 genomes]
rs11020604	0.90[ASN][1000 genomes]
rs1395384	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1518571	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1518577	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1607402	0.88[ASN][1000 genomes]
rs1607403	0.88[ASN][1000 genomes]
rs1607404	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1827931	0.93[ASN][1000 genomes]
rs1827932	0.88[ASN][1000 genomes]
rs2000960	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2032400	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2456559	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2456562	0.91[ASN][1000 genomes]
rs2456568	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456569	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462744	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2462750	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2511373	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2511375	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2511376	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2511398	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2511399	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4254038	0.87[ASN][1000 genomes]
rs4753111	0.93[ASN][1000 genomes]
rs4753113	0.88[ASN][1000 genomes]
rs4753520	0.91[ASN][1000 genomes]
rs6483281	0.88[ASN][1000 genomes]
rs7105031	0.88[ASN][1000 genomes]
rs7105060	0.88[ASN][1000 genomes]
rs7114457	0.93[ASN][1000 genomes]
rs72962810	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7935801	0.93[ASN][1000 genomes]
rs7936182	0.93[ASN][1000 genomes]
rs877340	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs908749	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2760207	chr11:93692312-93701588	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93692600-93694600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:93692800-93693400	Weak transcription	Pancreas	Pancrea

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