Variant report

Variant	rs2460053
Chromosome Location	chr11:93758565-93758566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10501813	0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113700	0.82[EUR][1000 genomes]
rs11825709	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1401184	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1518560	0.92[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1589166	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607401	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850656	0.92[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs1894165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894166	0.96[ASN][1000 genomes]
rs1945786	0.95[ASN][1000 genomes]
rs1945787	0.95[ASN][1000 genomes]
rs2020351	0.95[ASN][1000 genomes]
rs2102857	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139089	0.95[ASN][1000 genomes]
rs2176563	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203793	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213108	0.95[ASN][1000 genomes]
rs2213110	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2399750	0.95[ASN][1000 genomes]
rs2460047	0.82[EUR][1000 genomes]
rs2460049	0.89[ASN][1000 genomes]
rs2460050	0.95[ASN][1000 genomes]
rs2460052	0.94[ASN][1000 genomes]
rs2460064	0.96[ASN][1000 genomes]
rs2460065	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460069	0.95[ASN][1000 genomes]
rs2460070	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462733	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462735	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462756	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2462757	0.93[ASN][1000 genomes]
rs2462758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462759	0.92[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2462760	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2462763	0.95[ASN][1000 genomes]
rs2511380	0.95[ASN][1000 genomes]
rs2511381	0.89[ASN][1000 genomes]
rs2511403	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2511411	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938392	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57106172	0.94[ASN][1000 genomes]
rs57586533	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57953549	0.88[ASN][1000 genomes]
rs59013509	0.82[EUR][1000 genomes]
rs59689949	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59793398	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60539088	0.94[EUR][1000 genomes]
rs66480929	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66514329	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66523751	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66538341	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66650995	0.94[EUR][1000 genomes]
rs66918645	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66977226	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67001808	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67243356	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67412659	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67926172	0.94[EUR][1000 genomes]
rs67988338	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68019383	0.82[EUR][1000 genomes]
rs72964631	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964645	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964666	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551180	0.86[ASN][1000 genomes]
rs73564796	0.98[ASN][1000 genomes]
rs73564799	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959342	0.96[ASN][1000 genomes]
rs959343	0.96[ASN][1000 genomes]
rs978777	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9787791	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs989088	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93755600-93760600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:93755800-93761200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:93756200-93759000	Enhancers	HMEC	breast
4	chr11:93757400-93759400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93758000-93758800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:93758000-93758800	Weak transcription	NHEK	skin
7	chr11:93758000-93760600	Weak transcription	Fetal Lung	lung
8	chr11:93758000-93760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:93758200-93758800	Weak transcription	NH-A	brain

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