Variant report

Variant	rs2460146
Chromosome Location	chr15:76554755-76554756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76554323..76556286-chr15:76566730..76568876,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1801591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1914816	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255408	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2291449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2456027	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456033	0.85[ASN][1000 genomes]
rs2456040	0.96[ASN][1000 genomes]
rs2456042	0.96[ASN][1000 genomes]
rs2456047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2456053	0.92[AMR][1000 genomes]
rs2456063	0.89[ASN][1000 genomes]
rs2456066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2456067	0.89[ASN][1000 genomes]
rs2456070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2456072	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456074	0.96[ASN][1000 genomes]
rs2456075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460151	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460153	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs2460155	1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2469211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2469212	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2469214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2469215	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2469216	0.85[ASN][1000 genomes]
rs2469533	0.82[ASN][1000 genomes]
rs2469538	0.96[ASN][1000 genomes]
rs2469539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2469544	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2469552	0.85[ASN][1000 genomes]
rs2469564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2469568	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2469573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2938691	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2957037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959846	0.96[ASN][1000 genomes]
rs6495200	0.85[ASN][1000 genomes]
rs8042255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
2	chr15:76510400-76555000	Weak transcription	NH-A	brain
3	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:76535600-76555200	Weak transcription	Brain Substantia Nigra	brain
6	chr15:76539000-76555600	Weak transcription	HUVEC	blood vessel
7	chr15:76545400-76555400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:76546200-76554800	Strong transcription	Hela-S3	cervix
9	chr15:76546200-76555200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:76546200-76556000	Strong transcription	A549	lung
11	chr15:76546800-76558200	Weak transcription	Brain Angular Gyrus	brain
12	chr15:76548000-76555000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:76549000-76555200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:76549400-76555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:76549600-76555000	Weak transcription	Fetal Kidney	kidney
16	chr15:76550400-76563000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:76550600-76554800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:76550600-76555000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:76550600-76555200	Strong transcription	Adipose Nuclei	Adipose
20	chr15:76550600-76555200	Strong transcription	HSMM	muscle
21	chr15:76550600-76555400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:76550600-76555400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:76550600-76555400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:76550600-76555400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr15:76550600-76555800	Strong transcription	HepG2	liver
26	chr15:76550600-76557400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:76550600-76559200	ZNF genes & repeats	Fetal Stomach	stomach
28	chr15:76550600-76560400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr15:76550600-76562600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr15:76550600-76563000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr15:76550600-76563200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:76550600-76563400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:76550600-76563400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:76550600-76563600	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr15:76550600-76564000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr15:76550600-76578400	Strong transcription	Liver	Liver
37	chr15:76550800-76555000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:76551200-76555000	Strong transcription	Placenta	Placenta
39	chr15:76551200-76555200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:76551400-76555200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr15:76551600-76555000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:76551600-76555400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:76551800-76555200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:76551800-76555600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:76552000-76559400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:76552400-76555200	Weak transcription	Stomach Mucosa	stomach
47	chr15:76552800-76555200	Weak transcription	NHEK	skin
48	chr15:76553000-76555200	Strong transcription	NHDF-Ad	bronchial
49	chr15:76553200-76555200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:76553200-76555800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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