Variant report

Variant	rs2460151
Chromosome Location	chr15:76487507-76487508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76487373..76491413-chr15:76492592..76495149,4	K562	blood:
2	chr15:76482420..76485297-chr15:76485451..76488299,2	K562	blood:
3	chr15:76486525..76491130-chr15:76491292..76495169,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169758	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1801591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1914816	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255408	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2291449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2456027	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456033	0.85[ASN][1000 genomes]
rs2456040	0.96[ASN][1000 genomes]
rs2456042	0.96[ASN][1000 genomes]
rs2456047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2456053	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2456063	0.89[ASN][1000 genomes]
rs2456066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs2456067	0.89[ASN][1000 genomes]
rs2456070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs2456072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456074	0.96[ASN][1000 genomes]
rs2456075	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2456078	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460146	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2460155	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2469211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs2469212	0.86[ASN][1000 genomes]
rs2469214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2469215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs2469216	0.85[ASN][1000 genomes]
rs2469533	0.82[ASN][1000 genomes]
rs2469538	0.96[ASN][1000 genomes]
rs2469539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2469544	0.90[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2469552	0.85[ASN][1000 genomes]
rs2469564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[ASN][1000 genomes]
rs2469568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs2469573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[ASN][1000 genomes]
rs2938691	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs2957037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959846	0.96[ASN][1000 genomes]
rs6495200	0.85[ASN][1000 genomes]
rs8042255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs874224	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv1046099	chr15:76444695-76490547	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv1049916	chr15:76454194-76490547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76478200-76488400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:76478600-76487800	Weak transcription	Right Atrium	heart
3	chr15:76483200-76488000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:76483200-76488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:76483200-76488400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:76483600-76488200	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76483600-76488400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:76483600-76488400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:76483600-76488400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:76483600-76488400	Weak transcription	Brain Substantia Nigra	brain
11	chr15:76483600-76488400	Weak transcription	Fetal Heart	heart
12	chr15:76483600-76488400	Weak transcription	HSMM	muscle
13	chr15:76483600-76488600	Weak transcription	K562	blood
14	chr15:76483600-76493400	Enhancers	Stomach Mucosa	stomach
15	chr15:76483800-76487800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:76483800-76488000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:76483800-76488400	Weak transcription	Brain Anterior Caudate	brain
18	chr15:76483800-76488400	Weak transcription	HMEC	breast
19	chr15:76483800-76488400	Weak transcription	NHDF-Ad	bronchial
20	chr15:76483800-76491800	Weak transcription	Liver	Liver
21	chr15:76484000-76488200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:76484000-76488400	Weak transcription	Ovary	ovary
23	chr15:76484000-76498600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:76484000-76500800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:76484200-76488400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:76484200-76488600	Weak transcription	Primary B cells from cord blood	blood
27	chr15:76484200-76488600	Weak transcription	Pancreas	Pancrea
28	chr15:76484200-76498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:76484400-76488400	Weak transcription	Right Ventricle	heart
30	chr15:76484600-76489200	Weak transcription	GM12878-XiMat	blood
31	chr15:76484800-76488600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:76485400-76498400	Weak transcription	Fetal Brain Female	brain
33	chr15:76485600-76488000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:76486000-76487800	Enhancers	HepG2	liver
35	chr15:76486000-76492000	Enhancers	Esophagus	oesophagus
36	chr15:76486400-76489200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:76486600-76487600	Enhancers	Gastric	stomach
38	chr15:76486600-76487800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:76486800-76487800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:76486800-76488200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:76486800-76488200	Weak transcription	A549	lung
42	chr15:76486800-76488400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:76486800-76488600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr15:76486800-76491800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:76486800-76503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr15:76487000-76487800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:76487000-76488000	Weak transcription	Hela-S3	cervix
49	chr15:76487000-76488200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:76487000-76488200	Weak transcription	Brain Inferior Temporal Lobe	brain

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