Variant report

Variant	rs2460801
Chromosome Location	chr15:76164348-76164349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76161758..76164592-chr15:76173803..76175503,2	K562	blood:

Extended variants
information (count: 176 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13379955	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394122	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1498196	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1503955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1532783	1.00[EUR][1000 genomes]
rs1562403	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1695365	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16967747	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs170830	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1874955	1.00[EUR][1000 genomes]
rs1874956	1.00[EUR][1000 genomes]
rs1910510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1976328	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133099	1.00[EUR][1000 genomes]
rs2133408	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2133409	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2133410	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2405578	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2441928	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454209	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454210	1.00[CEU][hapmap]
rs2454212	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2454470	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2455897	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2460795	1.00[EUR][1000 genomes]
rs2460796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2469038	1.00[EUR][1000 genomes]
rs2469040	1.00[EUR][1000 genomes]
rs2593275	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593302	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2604403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2604405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2648435	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[TSI][hapmap]
rs2648437	0.93[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655137	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2955772	0.84[ASW][hapmap]
rs2959851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[EUR][1000 genomes]
rs334940	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs334941	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334951	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335673	1.00[EUR][1000 genomes]
rs335674	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335675	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335676	0.85[EUR][1000 genomes]
rs335678	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335679	0.93[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335684	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335687	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335693	0.85[EUR][1000 genomes]
rs335694	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335701	1.00[EUR][1000 genomes]
rs335710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335713	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335724	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335726	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335728	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335729	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335730	1.00[EUR][1000 genomes]
rs335731	1.00[EUR][1000 genomes]
rs335732	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335733	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	1.00[EUR][1000 genomes]
rs55719276	1.00[EUR][1000 genomes]
rs55782145	1.00[EUR][1000 genomes]
rs55828994	1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	1.00[EUR][1000 genomes]
rs56218266	1.00[EUR][1000 genomes]
rs57011816	1.00[EUR][1000 genomes]
rs57127155	1.00[EUR][1000 genomes]
rs57141410	1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	1.00[EUR][1000 genomes]
rs57971067	1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	1.00[EUR][1000 genomes]
rs58170668	0.92[EUR][1000 genomes]
rs58399164	1.00[EUR][1000 genomes]
rs58717562	1.00[EUR][1000 genomes]
rs58789594	1.00[EUR][1000 genomes]
rs59143042	1.00[EUR][1000 genomes]
rs59690620	1.00[EUR][1000 genomes]
rs59819402	1.00[EUR][1000 genomes]
rs59839117	1.00[EUR][1000 genomes]
rs60088262	1.00[EUR][1000 genomes]
rs60155009	1.00[EUR][1000 genomes]
rs60191258	1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[EUR][1000 genomes]
rs61521312	1.00[EUR][1000 genomes]
rs62027568	1.00[EUR][1000 genomes]
rs7168988	1.00[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7174280	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7174365	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175758	1.00[EUR][1000 genomes]
rs7177048	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7182720	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74024005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024006	1.00[EUR][1000 genomes]
rs74024007	1.00[EUR][1000 genomes]
rs74024009	1.00[EUR][1000 genomes]
rs74024011	1.00[EUR][1000 genomes]
rs74024014	1.00[EUR][1000 genomes]
rs74024015	1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	1.00[EUR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	0.83[EUR][1000 genomes]
rs74024022	1.00[EUR][1000 genomes]
rs74024023	1.00[EUR][1000 genomes]
rs74024028	1.00[EUR][1000 genomes]
rs74024029	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024030	1.00[EUR][1000 genomes]
rs74024032	1.00[EUR][1000 genomes]
rs74024035	1.00[EUR][1000 genomes]
rs74024038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024039	1.00[EUR][1000 genomes]
rs74024040	1.00[EUR][1000 genomes]
rs74024041	1.00[EUR][1000 genomes]
rs74024042	1.00[EUR][1000 genomes]
rs74024043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024044	1.00[EUR][1000 genomes]
rs74024045	1.00[EUR][1000 genomes]
rs74024047	1.00[EUR][1000 genomes]
rs74024048	1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	1.00[EUR][1000 genomes]
rs74024052	1.00[EUR][1000 genomes]
rs74024053	1.00[EUR][1000 genomes]
rs74024059	1.00[EUR][1000 genomes]
rs74024060	1.00[EUR][1000 genomes]
rs74024063	1.00[EUR][1000 genomes]
rs74024064	1.00[EUR][1000 genomes]
rs74024065	1.00[EUR][1000 genomes]
rs74024071	1.00[EUR][1000 genomes]
rs74024073	1.00[EUR][1000 genomes]
rs8025372	1.00[EUR][1000 genomes]
rs8028084	1.00[EUR][1000 genomes]
rs8028766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030102	1.00[CEU][hapmap]
rs8030469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8030948	0.85[EUR][1000 genomes]
rs8031263	1.00[EUR][1000 genomes]
rs8033005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8034430	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8035611	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8036952	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038729	0.92[EUR][1000 genomes]
rs9672219	1.00[EUR][1000 genomes]
rs974718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2460801	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137600-76165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:76137800-76165800	Weak transcription	Liver	Liver
4	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
7	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
8	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
10	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
11	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
12	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:76138800-76166000	Weak transcription	Esophagus	oesophagus
16	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
17	chr15:76140000-76165800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
19	chr15:76140400-76166000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:76140600-76165600	Weak transcription	Fetal Brain Male	brain
21	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:76141600-76166000	Weak transcription	NHLF	lung
23	chr15:76144800-76165800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:76146200-76166000	Weak transcription	Right Ventricle	heart
26	chr15:76146400-76166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:76146400-76166000	Weak transcription	Lung	lung
28	chr15:76148400-76166000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
30	chr15:76149400-76166000	Weak transcription	Fetal Intestine Small	intestine
31	chr15:76151800-76166000	Weak transcription	HUVEC	blood vessel
32	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:76153400-76168800	Weak transcription	Brain Substantia Nigra	brain
34	chr15:76154400-76165800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:76154400-76166000	Weak transcription	NHDF-Ad	bronchial
36	chr15:76155600-76166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:76155800-76165800	Weak transcription	Fetal Brain Female	brain
38	chr15:76155800-76165800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:76155800-76166400	Weak transcription	HepG2	liver
40	chr15:76156400-76165800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:76158200-76166000	Weak transcription	Primary T cells from cord blood	blood
42	chr15:76158600-76165800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr15:76159400-76166200	Weak transcription	A549	lung
44	chr15:76159600-76166000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:76159800-76165800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:76159800-76166000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:76160400-76165800	Weak transcription	Brain Angular Gyrus	brain
49	chr15:76160800-76176000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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