Variant report

Variant	rs2460831
Chromosome Location	chr11:18219673-18219674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10766463	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10832904	0.82[AMR][1000 genomes]
rs11024561	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11024563	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1915391	0.82[AMR][1000 genomes]
rs2445145	0.86[EUR][1000 genomes]
rs2445175	0.84[EUR][1000 genomes]
rs2445176	0.86[EUR][1000 genomes]
rs2445218	0.83[AMR][1000 genomes]
rs2445225	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2445226	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2468779	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2468790	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2468856	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2925145	0.86[EUR][1000 genomes]
rs4757628	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4757629	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4757630	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56310011	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67006796	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67712345	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7103794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7117484	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7117890	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7935726	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18211200-18225800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18218800-18220000	Weak transcription	HepG2	liver
3	chr11:18219600-18220400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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