Variant report

Variant	rs2465065
Chromosome Location	chr7:104461487-104461488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10216243	0.81[MEX][hapmap]
rs10237433	0.85[CHB][hapmap]
rs10247246	0.80[CHB][hapmap]
rs10250365	0.80[CHB][hapmap]
rs10256308	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259925	0.80[CHB][hapmap]
rs10270391	0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs10953454	0.80[CHB][hapmap];0.81[MEX][hapmap]
rs12535201	0.80[CHB][hapmap]
rs12669981	0.86[EUR][1000 genomes]
rs12672211	0.85[CHB][hapmap]
rs12705278	0.86[JPT][hapmap]
rs12705280	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12705281	0.80[CHB][hapmap];0.81[MEX][hapmap]
rs13230337	0.84[EUR][1000 genomes]
rs13233998	0.81[MEX][hapmap]
rs13243476	0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs1468813	0.80[CHB][hapmap]
rs17777379	0.80[CHB][hapmap]
rs35146170	0.80[CHB][hapmap];0.81[MEX][hapmap]
rs36059846	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4400324	0.81[JPT][hapmap]
rs58902803	0.81[EUR][1000 genomes]
rs61195574	0.87[EUR][1000 genomes]
rs67577079	0.84[EUR][1000 genomes]
rs6949139	0.85[CHB][hapmap]
rs6964274	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781864	0.80[CHB][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030875	chr7:104409391-104472647	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1028479	chr7:104409391-104479087	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv528392	chr7:104411273-104466675	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1019625	chr7:104429371-104461487	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv437560	chr7:104461487-104482321	Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104440400-104482400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104457400-104461600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:104458400-104463400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:104459600-104461800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:104459800-104462000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:104459800-104463000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:104460400-104461800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:104460400-104463200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:104460400-104465600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:104460800-104461800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:104460800-104462200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:104461000-104462600	Enhancers	Fetal Kidney	kidney
13	chr7:104461000-104470800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:104461200-104461800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:104461200-104462000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:104461400-104465600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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