Variant report
| Variant | rs2468789 |
|---|---|
| Chromosome Location | chr11:18231749-18231750 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MRGPRX4-1 | chr11:18231033-18232217 | XLOC_009080 |
| 2 | lnc-MRGPRX4-1 | chr11:18231033-18233054 | XLOC_009080 |
| 3 | lnc-MRGPRX4-1 | chr11:18231033-18233055 | NR_026541 |
| 4 | lnc-MRGPRX4-1 | chr11:18231033-18232217 | NR_026564 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12577038 | 0.95[ASN][1000 genomes] |
| rs1378609 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes] |
| rs2445174 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2445175 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs2445228 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2460827 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2468790 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs2956632 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2956633 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2956634 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3100768 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55943578 | 0.91[ASN][1000 genomes] |
| rs56149966 | 0.87[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7927495 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv428569 | chr11:18194030-18350869 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv975156 | chr11:18230807-18245674 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
