Variant report

Variant	rs2468790
Chromosome Location	chr11:18230711-18230712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRGPRX4-1	chr11:18230678-18230740	XLOC_009080
2	lnc-MRGPRX4-1	chr11:18230685-18230740	XLOC_009080
3	lnc-MRGPRX4-1	chr11:18230685-18230740	XLOC_009080
4	lnc-MRGPRX4-1	chr11:18230685-18230740	NR_026541
5	lnc-MRGPRX4-1	chr11:18230685-18230740	NR_026564

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10766463	0.84[EUR][1000 genomes]
rs10832908	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11024561	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11024563	0.86[EUR][1000 genomes]
rs11024578	0.81[CEU][hapmap]
rs1378609	0.87[CHB][hapmap]
rs2168363	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2445145	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2445174	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2445175	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2445176	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2445218	0.84[AMR][1000 genomes]
rs2445225	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445226	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460831	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2468779	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2468789	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2468856	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2925145	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3100768	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4757628	0.85[EUR][1000 genomes]
rs4757629	0.85[EUR][1000 genomes]
rs4757630	0.85[EUR][1000 genomes]
rs55943578	0.82[ASN][1000 genomes]
rs56310011	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67006796	0.85[EUR][1000 genomes]
rs67712345	0.85[EUR][1000 genomes]
rs7103794	0.85[EUR][1000 genomes]
rs7117484	0.85[EUR][1000 genomes]
rs7117890	0.85[EUR][1000 genomes]
rs7927495	0.82[ASN][1000 genomes]
rs7935726	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18226000-18230800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18230600-18230800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:18230600-18231000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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