Variant report

Variant	rs2469225
Chromosome Location	chr15:76640658-76640659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10152388	0.82[EUR][1000 genomes]
rs1518964	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs157579	0.82[EUR][1000 genomes]
rs16967934	1.00[CEU][hapmap]
rs182253	0.81[YRI][hapmap]
rs2404739	0.82[EUR][1000 genomes]
rs2460142	0.92[EUR][1000 genomes]
rs2469563	0.82[EUR][1000 genomes]
rs283796	0.81[YRI][hapmap]
rs284906	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957610	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3878209	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs494268	0.81[YRI][hapmap]
rs7163654	1.00[CEU][hapmap]
rs73450231	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76630200-76641800	Weak transcription	A549	lung
2	chr15:76639200-76646400	Weak transcription	Aorta	Aorta
3	chr15:76639400-76641200	Weak transcription	HepG2	liver
4	chr15:76639600-76641800	Weak transcription	Hela-S3	cervix
5	chr15:76639800-76642000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:76639800-76659800	Weak transcription	Gastric	stomach
7	chr15:76639800-76682600	Weak transcription	Pancreas	Pancrea
8	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
9	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
10	chr15:76640000-76642000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:76640200-76658800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:76640400-76640800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr15:76640400-76646400	Weak transcription	Fetal Stomach	stomach
14	chr15:76640400-76646400	Weak transcription	K562	blood
15	chr15:76640400-76648800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:76640600-76641800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:76640600-76646200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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