Variant report

Variant	rs2469574
Chromosome Location	chr15:76602131-76602132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76589441..76591088-chr15:76601198..76602843,2	K562	blood:
2	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
3	chr15:76579019..76580557-chr15:76600815..76603366,2	K562	blood:
4	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
5	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
6	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
7	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

Variant related genes	Relation type
ENSG00000159556	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10220790	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12708522	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs1533600	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs157764	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs157765	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs157767	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	1.00[AMR][1000 genomes]
rs157781	1.00[AMR][1000 genomes]
rs157782	1.00[AMR][1000 genomes]
rs157784	1.00[AMR][1000 genomes]
rs157786	1.00[AMR][1000 genomes]
rs157792	1.00[AMR][1000 genomes]
rs157793	1.00[AMR][1000 genomes]
rs166932	1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1814764	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs185860	1.00[AMR][1000 genomes]
rs1875886	1.00[AMR][1000 genomes]
rs1878877	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs190782	1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs2037306	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2176622	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2244050	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2245180	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2247488	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2250805	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2405329	1.00[AMR][1000 genomes]
rs2405330	1.00[AMR][1000 genomes]
rs2405332	1.00[AMR][1000 genomes]
rs2456030	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456032	1.00[AMR][1000 genomes]
rs2456034	1.00[AMR][1000 genomes]
rs2456035	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2456036	1.00[AMR][1000 genomes]
rs2456037	1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456044	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456056	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456058	1.00[AMR][1000 genomes]
rs2456059	1.00[AMR][1000 genomes]
rs2456062	1.00[AMR][1000 genomes]
rs2456064	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456068	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456069	1.00[AMR][1000 genomes]
rs2456077	1.00[AMR][1000 genomes]
rs2459364	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2460141	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2460143	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460145	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460149	1.00[AMR][1000 genomes]
rs2460157	1.00[AMR][1000 genomes]
rs2460159	1.00[AMR][1000 genomes]
rs2469209	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469217	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2469218	1.00[AMR][1000 genomes]
rs2469219	1.00[AMR][1000 genomes]
rs2469220	1.00[AMR][1000 genomes]
rs2469221	1.00[AMR][1000 genomes]
rs2469223	1.00[AMR][1000 genomes]
rs2469536	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469537	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469540	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469545	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469546	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs2469549	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469550	0.89[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	1.00[AMR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2516308	1.00[AMR][1000 genomes]
rs283788	1.00[AMR][1000 genomes]
rs283790	1.00[AMR][1000 genomes]
rs283792	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs283794	1.00[AMR][1000 genomes]
rs283797	1.00[AMR][1000 genomes]
rs283798	0.83[AMR][1000 genomes]
rs283800	1.00[AMR][1000 genomes]
rs284879	1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284887	1.00[AMR][1000 genomes]
rs284888	1.00[AMR][1000 genomes]
rs284889	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs284890	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs284900	1.00[AMR][1000 genomes]
rs2938692	1.00[AMR][1000 genomes]
rs2938693	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2944380	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs426225	0.83[AMR][1000 genomes]
rs4886797	1.00[AMR][1000 genomes]
rs542148	1.00[AMR][1000 genomes]
rs598011	1.00[AMR][1000 genomes]
rs6495202	1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]
rs7164815	1.00[AMR][1000 genomes]
rs8040818	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
2	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:76584600-76602400	Weak transcription	Primary B cells from cord blood	blood
4	chr15:76584800-76602200	Weak transcription	Fetal Thymus	thymus
5	chr15:76585200-76602400	Weak transcription	Primary T cells from cord blood	blood
6	chr15:76586200-76602400	Weak transcription	NH-A	brain
7	chr15:76586400-76602400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:76592000-76602200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:76592000-76602200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:76592200-76602200	Weak transcription	Spleen	Spleen
11	chr15:76592600-76602400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:76593400-76602400	Weak transcription	Lung	lung
13	chr15:76593400-76602600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:76596200-76602200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:76597000-76602600	Weak transcription	Fetal Intestine Small	intestine
16	chr15:76599400-76602800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:76599800-76602400	Weak transcription	Fetal Brain Female	brain
18	chr15:76600200-76602200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:76600800-76602800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr15:76601000-76602800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:76601200-76602600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:76601200-76602800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr15:76601400-76602400	Enhancers	Right Atrium	heart
24	chr15:76601400-76602800	Enhancers	Placenta	Placenta
25	chr15:76601600-76603000	Weak transcription	Gastric	stomach
26	chr15:76601800-76602200	Transcr. at gene 5' and 3'	K562	blood
27	chr15:76601800-76602400	Active TSS	GM12878-XiMat	blood
28	chr15:76601800-76602400	Enhancers	HUVEC	blood vessel
29	chr15:76601800-76602400	Enhancers	NHDF-Ad	bronchial
30	chr15:76601800-76602600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr15:76601800-76602800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:76601800-76602800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:76601800-76602800	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr15:76601800-76602800	Flanking Active TSS	HepG2	liver
35	chr15:76601800-76603000	Flanking Active TSS	Hela-S3	cervix
36	chr15:76602000-76602200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:76602000-76602200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr15:76602000-76602200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:76602000-76602200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr15:76602000-76602200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:76602000-76602200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:76602000-76602200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:76602000-76602200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:76602000-76602200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:76602000-76602200	Enhancers	Colonic Mucosa	Colon
46	chr15:76602000-76602200	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:76602000-76602200	Enhancers	Fetal Heart	heart
48	chr15:76602000-76602200	Flanking Active TSS	Ovary	ovary
49	chr15:76602000-76602200	Active TSS	Psoas Muscle	Psoas
50	chr15:76602000-76602200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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