Variant report

Variant	rs2470689
Chromosome Location	chr3:99096196-99096197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1021081	0.85[EUR][1000 genomes]
rs1021082	0.85[EUR][1000 genomes]
rs1031966	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1031967	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11711371	0.88[EUR][1000 genomes]
rs11718186	0.85[EUR][1000 genomes]
rs11922930	0.80[EUR][1000 genomes]
rs12487192	0.85[EUR][1000 genomes]
rs12490465	0.85[EUR][1000 genomes]
rs12493841	0.90[EUR][1000 genomes]
rs12493876	0.90[EUR][1000 genomes]
rs13325971	0.90[EUR][1000 genomes]
rs13326810	0.85[EUR][1000 genomes]
rs1383845	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1383847	0.81[AMR][1000 genomes]
rs1383852	0.94[EUR][1000 genomes]
rs1383855	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1383856	0.88[EUR][1000 genomes]
rs1383858	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1383859	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1406542	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1406543	0.94[EUR][1000 genomes]
rs1481522	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1481530	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1481541	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1481542	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1481543	0.88[EUR][1000 genomes]
rs1481545	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1481546	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1481549	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1580367	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1600780	0.80[EUR][1000 genomes]
rs1600781	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812813	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1871790	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2086520	0.89[EUR][1000 genomes]
rs2101108	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2128021	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2128025	0.80[EUR][1000 genomes]
rs2170385	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2170386	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2219969	0.91[EUR][1000 genomes]
rs2219970	0.88[EUR][1000 genomes]
rs2245932	0.90[EUR][1000 genomes]
rs2245940	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2341817	0.85[EUR][1000 genomes]
rs2448967	0.89[EUR][1000 genomes]
rs2448969	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2464138	0.85[EUR][1000 genomes]
rs2464139	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2464146	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2464148	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623319	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623320	0.91[EUR][1000 genomes]
rs2623321	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623323	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623324	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623325	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623326	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623327	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623328	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623329	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623330	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623331	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623332	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623333	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623334	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623336	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623338	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623339	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623340	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623342	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623344	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623346	0.90[EUR][1000 genomes]
rs2623347	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623348	0.91[EUR][1000 genomes]
rs2623349	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623350	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623351	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623354	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623355	0.91[EUR][1000 genomes]
rs2623356	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623357	0.90[EUR][1000 genomes]
rs2623358	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623363	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2623364	0.94[EUR][1000 genomes]
rs2623371	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2623372	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2623373	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2623375	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2700586	0.81[EUR][1000 genomes]
rs2700590	0.91[EUR][1000 genomes]
rs2700592	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700593	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700594	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700595	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700599	0.80[EUR][1000 genomes]
rs2700601	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2700602	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2700603	0.94[EUR][1000 genomes]
rs2700606	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700607	0.82[EUR][1000 genomes]
rs2700608	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700609	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700610	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700611	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2700615	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700621	0.90[EUR][1000 genomes]
rs2700622	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2700623	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700624	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700636	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700637	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700639	0.83[EUR][1000 genomes]
rs2700640	0.82[EUR][1000 genomes]
rs2700641	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2700642	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2700644	0.82[EUR][1000 genomes]
rs2700646	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2700649	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2700667	0.81[EUR][1000 genomes]
rs2700671	0.94[EUR][1000 genomes]
rs2700672	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2929433	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929434	0.91[EUR][1000 genomes]
rs2929435	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929436	0.80[EUR][1000 genomes]
rs2929437	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929440	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2929441	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929442	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929444	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2951490	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2951491	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2951492	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2960091	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2960092	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2960093	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4324495	0.85[EUR][1000 genomes]
rs4365660	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4530567	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6440580	0.88[EUR][1000 genomes]
rs6778214	0.85[EUR][1000 genomes]
rs6801835	0.90[EUR][1000 genomes]
rs6807371	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73134477	0.88[EUR][1000 genomes]
rs73134478	0.83[EUR][1000 genomes]
rs73134486	0.85[EUR][1000 genomes]
rs73138305	0.85[EUR][1000 genomes]
rs73141805	0.86[EUR][1000 genomes]
rs73141807	0.88[EUR][1000 genomes]
rs7429158	0.85[EUR][1000 genomes]
rs744189	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7625600	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7631745	0.88[EUR][1000 genomes]
rs767808	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs969987	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs980842	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9813332	0.85[EUR][1000 genomes]
rs9833036	0.90[EUR][1000 genomes]
rs9835548	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9841436	0.85[EUR][1000 genomes]
rs9853583	0.85[EUR][1000 genomes]
rs9990265	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99092600-99112600	Weak transcription	NHLF	lung
2	chr3:99095800-99099800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:99096000-99096200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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