Variant report

Variant	rs2470934
Chromosome Location	chr7:104544948-104544949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10808135	0.89[ASN][1000 genomes]
rs12667927	0.89[ASN][1000 genomes]
rs13232695	0.89[ASN][1000 genomes]
rs2214083	0.80[ASN][1000 genomes]
rs2430483	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2891785	0.81[ASN][1000 genomes]
rs6950960	0.81[ASN][1000 genomes]
rs735443	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104535000-104557000	Weak transcription	Fetal Kidney	kidney
2	chr7:104537200-104545200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:104538200-104546600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104541800-104546000	Strong transcription	Fetal Intestine Small	intestine
5	chr7:104542400-104552400	Weak transcription	Pancreas	Pancrea
6	chr7:104543400-104545200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:104544000-104546200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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