Variant report

Variant	rs2470936
Chromosome Location	chr7:104562316-104562317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104560247..104565099-chr7:104651961..104655493,7	MCF-7	breast:
2	chr7:104560339..104562932-chr7:104653085..104655925,2	MCF-7	breast:
3	chr7:104561816..104567252-chr7:104650571..104656074,9	K562	blood:

Variant related genes	Relation type
ENSG00000239569	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2428159	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2430481	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2470935	1.00[AMR][1000 genomes]
rs4236578	1.00[AMR][1000 genomes]
rs4431527	1.00[AMR][1000 genomes]
rs4466333	1.00[AMR][1000 genomes]
rs4604355	1.00[YRI][hapmap]
rs4730054	1.00[AMR][1000 genomes]
rs4730055	1.00[AMR][1000 genomes]
rs4730056	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6466024	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6466026	1.00[AMR][1000 genomes]
rs6968485	1.00[AMR][1000 genomes]
rs7778530	1.00[AMR][1000 genomes]
rs7783743	1.00[AMR][1000 genomes]
rs7784215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104552600-104563400	Weak transcription	Pancreas	Pancrea
2	chr7:104554600-104562800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104555200-104563400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:104555200-104563600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:104556000-104562600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:104558400-104571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:104559000-104563600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:104559200-104562800	Weak transcription	Stomach Mucosa	stomach
9	chr7:104559200-104563200	Weak transcription	GM12878-XiMat	blood
10	chr7:104559200-104563600	Weak transcription	Hela-S3	cervix
11	chr7:104559600-104562800	Weak transcription	Liver	Liver
12	chr7:104560400-104563600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:104560800-104563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:104561000-104563200	Enhancers	Fetal Intestine Large	intestine
15	chr7:104561400-104562600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:104561400-104563000	Genic enhancers	Fetal Intestine Small	intestine
17	chr7:104561600-104564000	Enhancers	NHDF-Ad	bronchial
18	chr7:104561600-104564200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:104561800-104562800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:104561800-104563600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:104561800-104563600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr7:104561800-104563600	Enhancers	Duodenum Mucosa	Duodenum
23	chr7:104562000-104562400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:104562000-104562800	Weak transcription	Fetal Kidney	kidney
25	chr7:104562200-104562400	Enhancers	Small Intestine	intestine
26	chr7:104562200-104563200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:104562200-104564000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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