Variant report

Variant	rs2472663
Chromosome Location	chr3:119472327-119472328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11711386	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11712308	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13070374	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2472662	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67809845	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7623217	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9825453	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9828064	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3426402	chr3:119472162-119475860	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:119450600-119474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:119451000-119473400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:119451200-119475200	Weak transcription	Fetal Brain Male	brain
5	chr3:119463200-119476000	Weak transcription	Spleen	Spleen
6	chr3:119465600-119474400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:119470000-119474400	Strong transcription	Ovary	ovary
8	chr3:119470200-119472400	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:119470600-119474600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr3:119470800-119473400	Weak transcription	Pancreas	Pancrea
11	chr3:119470800-119473600	Weak transcription	Aorta	Aorta
12	chr3:119471000-119472600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:119471000-119472800	Weak transcription	Brain Anterior Caudate	brain
14	chr3:119471000-119479400	Weak transcription	Brain Substantia Nigra	brain
15	chr3:119471200-119472400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:119471200-119472800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:119471200-119474800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:119471200-119475200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:119471200-119475800	Weak transcription	Brain Angular Gyrus	brain
20	chr3:119471400-119474200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:119472200-119474400	Strong transcription	Fetal Kidney	kidney
22	chr3:119472200-119474400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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