Variant report

Variant	rs2476023
Chromosome Location	chr1:197351039-197351040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10801603	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10922234	0.90[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap]
rs10922253	0.81[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap]
rs11808659	0.82[YRI][hapmap]
rs12126335	0.87[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs12134409	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs12563307	0.90[CEU][hapmap]
rs1337167	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs1337168	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17554990	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17555558	0.87[EUR][1000 genomes]
rs17618358	0.88[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2476019	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2476021	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2494269	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2759656	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs2759659	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2759661	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2786098	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786101	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2786116	0.95[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2786117	0.95[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786119	0.95[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2821101	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2821107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821115	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2821116	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2821117	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2821125	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2821132	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3122635	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3122636	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3888103	0.82[YRI][hapmap]
rs4915231	0.88[ASN][1000 genomes]
rs4915525	0.90[ASN][1000 genomes]
rs4915526	0.90[ASN][1000 genomes]
rs6428397	0.88[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs6428399	0.82[YRI][hapmap]
rs6428400	0.82[YRI][hapmap]
rs6664399	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6667162	0.82[YRI][hapmap]
rs6677361	0.83[GIH][hapmap];0.84[TSI][hapmap]
rs6685222	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes]
rs7551088	0.86[ASN][1000 genomes]
rs949571	0.87[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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