Variant report

Variant	rs2485034
Chromosome Location	chr1:194120380-194120381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs302249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs302253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs302257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs539996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs587943	1.00[AMR][1000 genomes]
rs603248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs658855	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv872836	chr1:194032486-194130204	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832181	chr1:194089117-194255615	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv872837	chr1:194106280-194221509	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194120000-194120400	Active TSS	Primary T cells fromperipheralblood	blood
2	chr1:194120000-194120600	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr1:194120000-194120600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr1:194120200-194120400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr1:194120200-194120600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:194120200-194120600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr1:194120200-194120600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:194120200-194120600	Active TSS	Duodenum Mucosa	Duodenum
9	chr1:194120200-194120600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr1:194120200-194120600	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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