Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10779659	0.80[CEU][hapmap]
rs10864191	0.80[CEU][hapmap]
rs11120613	0.85[CEU][hapmap]
rs11120620	0.83[CEU][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs12091942	0.83[CEU][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs12406638	0.80[CEU][hapmap]
rs17025349	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1832951	0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2255781	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2797227	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2797228	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2820726	0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs2820729	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4330896	0.80[CEU][hapmap]
rs4388678	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs6664811	0.80[ASN][1000 genomes]
rs6666832	0.80[CEU][hapmap]
rs6698895	0.80[CEU][hapmap]
rs6699592	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7515592	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv468116	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv549191	chr1:215922860-215947408	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215928200-215948800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: