Variant report

Variant	rs2489322
Chromosome Location	chr1:225187973-225187974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225187463..225189933-chr1:225191453..225195155,3	K562	blood:

Extended variants
information (count: 315 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:310)

rs_ID	r²[population]
rs10399841	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10495228	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10495229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10495230	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080260	0.81[ASN][1000 genomes]
rs10915779	0.81[JPT][hapmap]
rs10915782	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10915783	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10915784	0.82[EUR][1000 genomes]
rs10915787	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11588063	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12067806	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12075556	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12080027	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12561993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562045	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12562085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12562917	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563033	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563286	0.88[ASN][1000 genomes]
rs12563857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563866	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564683	0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12564768	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564776	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565019	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12565073	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565401	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12565439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565737	0.83[AMR][1000 genomes]
rs12565823	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12565833	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565929	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12566396	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566886	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567069	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567082	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12567091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12567334	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12567461	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12567470	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12567499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567812	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568142	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395116	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1480104	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1482279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1482280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1506069	0.81[JPT][hapmap]
rs1506070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506071	0.81[JPT][hapmap]
rs1506072	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1506073	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1542571	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1580956	0.81[AFR][1000 genomes]
rs1587980	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600531	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1600532	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1600865	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16843950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16843997	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16844005	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16844334	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16844355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16844377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16844400	0.88[ASN][1000 genomes]
rs16856829	0.85[ASN][1000 genomes]
rs16857787	0.94[ASN][1000 genomes]
rs16858145	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16858216	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16858299	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16858661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858766	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16858962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1842331	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1847908	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1847909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1905113	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1905114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905115	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905117	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1934203	0.86[ASN][1000 genomes]
rs1936629	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1961688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1982707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2086368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2101143	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2128267	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2128268	0.81[JPT][hapmap]
rs2128269	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2128270	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap]
rs2170109	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2199832	0.87[ASN][1000 genomes]
rs2291227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298257	0.87[JPT][hapmap]
rs2405701	0.81[AMR][1000 genomes]
rs2405702	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2406097	0.82[CHB][hapmap]
rs2406098	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449256	0.81[JPT][hapmap]
rs2449257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449262	0.84[AFR][1000 genomes]
rs2449273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449275	0.82[AFR][1000 genomes]
rs2449276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449278	0.82[AFR][1000 genomes]
rs2449280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449283	0.83[AFR][1000 genomes]
rs2449284	0.85[AFR][1000 genomes]
rs2449292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449303	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2449307	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2449308	0.88[AMR][1000 genomes]
rs2449311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449313	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449315	0.93[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2449316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449320	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2449327	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2456328	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2456335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2456336	0.81[JPT][hapmap]
rs2456338	0.81[AFR][1000 genomes]
rs2456339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2456340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2456343	0.82[AFR][1000 genomes]
rs2456346	0.82[AFR][1000 genomes]
rs2456349	0.81[JPT][hapmap]
rs2456351	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2489300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489302	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2489303	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2489310	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2489317	0.85[AFR][1000 genomes]
rs2489318	0.85[AFR][1000 genomes]
rs2489319	0.85[AFR][1000 genomes]
rs2489321	0.85[AFR][1000 genomes]
rs2489324	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2489325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2489326	0.82[AFR][1000 genomes]
rs2489327	0.81[JPT][hapmap]
rs2489328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489331	0.84[AFR][1000 genomes]
rs2489332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2489334	0.84[AFR][1000 genomes]
rs2489336	0.84[AFR][1000 genomes]
rs2489337	0.81[JPT][hapmap]
rs2489339	0.80[AFR][1000 genomes]
rs2489341	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489342	0.81[AFR][1000 genomes]
rs2489344	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489346	0.81[JPT][hapmap]
rs2489348	0.81[JPT][hapmap]
rs2489352	0.81[JPT][hapmap]
rs2501061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501068	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2501072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2501073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2501078	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2501081	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2501086	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2501107	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2501108	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501113	0.81[AFR][1000 genomes]
rs2501114	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2501117	0.82[AFR][1000 genomes]
rs2501120	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2501121	0.82[AFR][1000 genomes]
rs2501122	0.82[AFR][1000 genomes]
rs2501123	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2501125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501127	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501128	0.85[AFR][1000 genomes]
rs2501129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2501136	0.81[AFR][1000 genomes]
rs2501140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501143	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2501147	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2501151	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2501153	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2501156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2929627	0.82[AFR][1000 genomes]
rs2929629	0.85[AFR][1000 genomes]
rs2929632	0.81[AFR][1000 genomes]
rs2939363	0.81[JPT][hapmap]
rs3101905	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101906	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101907	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101911	0.80[AMR][1000 genomes]
rs3101914	0.85[AMR][1000 genomes]
rs3101915	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3101919	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102108	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102109	0.85[AMR][1000 genomes]
rs3102110	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102112	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102113	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102114	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102116	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105549	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105551	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105552	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105553	0.87[AMR][1000 genomes]
rs3105554	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105555	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105556	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105558	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105559	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105560	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105561	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105562	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105563	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3105565	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105566	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105567	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105568	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105569	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105570	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105571	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105575	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3120985	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3120990	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3120992	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128643	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128644	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128646	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128649	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128650	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3128651	0.85[AMR][1000 genomes]
rs3128652	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128653	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128656	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128658	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128660	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128662	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128663	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128665	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128668	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3128669	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128670	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3128675	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3128676	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3991317	0.88[ASN][1000 genomes]
rs4342820	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4379650	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4587536	0.86[ASN][1000 genomes]
rs55635719	0.85[ASN][1000 genomes]
rs55668169	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55681905	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55752315	0.85[ASN][1000 genomes]
rs55752383	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55754430	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55761817	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55785201	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55786647	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55876129	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55962425	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56061128	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56088704	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56088855	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56152573	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203783	0.92[ASN][1000 genomes]
rs56251723	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56275175	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56337810	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57889280	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58279596	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60392992	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60692803	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61041116	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61466304	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6426049	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6426052	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6426163	0.85[CHB][hapmap]
rs6662231	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6674717	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6677680	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6697156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6702926	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs729398	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7517625	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7523949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7531542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7547639	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs769295	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs769296	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9426165	0.88[ASN][1000 genomes]
rs973980	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981067	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs981068	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1804634	chr1:225137134-225206826	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225157600-225201400	Weak transcription	Pancreas	Pancrea
2	chr1:225184600-225202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:225187000-225203600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:225187800-225189200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:225187800-225192400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links