The 2.0 version of rSNPBase

Variant report

Variant rs2489347
Chromosome Location chr1:225153850-225153851
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225133600-225156200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
2 chr1:225138600-225155600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr1:225138800-225163800 Weak transcription Hela-S3 cervix
4 chr1:225140000-225158400 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:225141400-225158800 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr1:225141400-225162600 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr1:225141600-225159000 Weak transcription Ovary ovary
8 chr1:225141800-225159400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:225141800-225160200 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr1:225142800-225158400 Weak transcription NH-A brain
11 chr1:225142800-225162200 Weak transcription Fetal Kidney kidney
12 chr1:225142800-225164400 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:225143400-225161800 Weak transcription A549 lung
14 chr1:225145200-225160600 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:225145600-225158800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr1:225147000-225157200 Strong transcription K562 blood
17 chr1:225147400-225157800 Weak transcription HepG2 liver
18 chr1:225148200-225156000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:225148400-225154400 Weak transcription Fetal Muscle Trunk muscle
20 chr1:225148400-225158200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:225148800-225158000 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr1:225150000-225156000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:225150400-225157200 Weak transcription Pancreas Pancrea
24 chr1:225150400-225157600 Weak transcription Fetal Intestine Large intestine
25 chr1:225150400-225160600 Weak transcription Fetal Intestine Small intestine
26 chr1:225150400-225167200 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr1:225150400-225171200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr1:225151600-225155200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:225151600-225157200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:225151800-225154200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:225151800-225154200 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr1:225152400-225155000 Weak transcription HSMM muscle
33 chr1:225152800-225155400 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:225152800-225157200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:225153200-225157000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:225153200-225158000 Weak transcription Liver Liver
37 chr1:225153400-225154800 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:225153400-225155200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:225153400-225157400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:225153400-225160800 Weak transcription Primary hematopoietic stem cells blood
41 chr1:225153600-225158600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015