Variant report

Variant	rs2490236
Chromosome Location	chr6:80821837-80821838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80816163..80818419-chr6:80820042..80822251,2	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1892474	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490243	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505930	0.82[JPT][hapmap]
rs600843	0.94[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80816800-80836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:80817000-80822000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:80817000-80822400	Weak transcription	Pancreas	Pancrea
4	chr6:80817000-80838200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
6	chr6:80817600-80822000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:80817600-80822000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:80817600-80822000	Weak transcription	Brain Substantia Nigra	brain
9	chr6:80817600-80822200	Weak transcription	Esophagus	oesophagus
10	chr6:80817600-80822400	Weak transcription	Left Ventricle	heart
11	chr6:80817600-80824600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:80817600-80825400	Weak transcription	Fetal Stomach	stomach
13	chr6:80817600-80828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:80817600-80832200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:80817600-80836000	Weak transcription	HSMM	muscle
16	chr6:80817600-80838200	Weak transcription	Aorta	Aorta
17	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:80817800-80822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:80817800-80823400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:80817800-80823400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:80817800-80824200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:80817800-80824600	Weak transcription	Primary T cells from cord blood	blood
24	chr6:80817800-80825400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:80817800-80826200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:80817800-80827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:80817800-80828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:80817800-80830600	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:80817800-80840600	Weak transcription	Ovary	ovary
30	chr6:80818000-80823400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:80818000-80838200	Weak transcription	Fetal Lung	lung
32	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:80818400-80826200	Weak transcription	Liver	Liver
35	chr6:80819400-80822400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:80820800-80822800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:80821200-80826800	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:80821400-80822600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:80821400-80823000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:80821400-80838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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