Variant report

Variant	rs2492292
Chromosome Location	chr1:93359917-93359918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11164843	0.82[AMR][1000 genomes]
rs11164845	0.82[AMR][1000 genomes]
rs11587920	0.82[AMR][1000 genomes]
rs12065253	0.82[AMR][1000 genomes]
rs12066638	0.86[AMR][1000 genomes]
rs12074608	0.82[AMR][1000 genomes]
rs2255723	0.84[AMR][1000 genomes]
rs2263247	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2391177	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2481710	0.81[EUR][1000 genomes]
rs2481711	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2481712	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2481713	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2492293	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2492294	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2774945	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2774946	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2774949	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2774950	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2774952	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2774953	0.81[EUR][1000 genomes]
rs2774954	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2774955	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2774956	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2811589	0.86[AMR][1000 genomes]
rs2811590	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2811591	0.86[AMR][1000 genomes]
rs2811593	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811594	0.81[EUR][1000 genomes]
rs2811596	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811597	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811598	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2811600	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34084844	0.85[AMR][1000 genomes]
rs34389767	0.86[AMR][1000 genomes]
rs4420089	0.80[AMR][1000 genomes]
rs4450029	0.82[AMR][1000 genomes]
rs4847223	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6698179	0.84[AMR][1000 genomes]
rs6698233	0.84[AMR][1000 genomes]
rs7550660	0.82[EUR][1000 genomes]
rs9439948	0.86[AMR][1000 genomes]
rs9440127	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9440134	0.86[AMR][1000 genomes]
rs949915	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93350000-93366400	Weak transcription	Thymus	Thymus

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