Variant report

Variant	rs2501067
Chromosome Location	chr1:225134670-225134671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:225117389..225119047-chr1:225133436..225135148,2	K562	blood:
2	chr1:225133403..225135871-chr1:225146349..225149223,2	K562	blood:
3	chr1:225133516..225138195-chr1:225140002..225143763,5	K562	blood:

Variant related genes	Relation type
ENSG00000185842	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1078794	0.87[AFR][1000 genomes]
rs1580956	0.80[AFR][1000 genomes]
rs2449262	0.83[AFR][1000 genomes]
rs2449264	0.86[AFR][1000 genomes]
rs2449265	0.86[AFR][1000 genomes]
rs2449267	0.86[AFR][1000 genomes]
rs2449268	0.86[AFR][1000 genomes]
rs2449270	0.86[AFR][1000 genomes]
rs2449271	0.82[AFR][1000 genomes]
rs2449272	0.88[AFR][1000 genomes]
rs2449275	0.82[AFR][1000 genomes]
rs2449278	0.82[AFR][1000 genomes]
rs2449283	0.83[AFR][1000 genomes]
rs2449284	0.85[AFR][1000 genomes]
rs2449317	0.93[AFR][1000 genomes]
rs2449319	0.88[AFR][1000 genomes]
rs2449321	0.88[AFR][1000 genomes]
rs2449323	0.88[AFR][1000 genomes]
rs2449324	0.88[AFR][1000 genomes]
rs2456338	0.80[AFR][1000 genomes]
rs2456343	0.82[AFR][1000 genomes]
rs2456346	0.81[AFR][1000 genomes]
rs2489307	0.88[AFR][1000 genomes]
rs2489309	0.88[AFR][1000 genomes]
rs2489315	0.85[AFR][1000 genomes]
rs2489316	0.86[AFR][1000 genomes]
rs2489317	0.85[AFR][1000 genomes]
rs2489318	0.85[AFR][1000 genomes]
rs2489319	0.85[AFR][1000 genomes]
rs2489321	0.85[AFR][1000 genomes]
rs2489326	0.82[AFR][1000 genomes]
rs2489331	0.83[AFR][1000 genomes]
rs2489334	0.83[AFR][1000 genomes]
rs2489336	0.83[AFR][1000 genomes]
rs2489339	0.84[AFR][1000 genomes]
rs2489340	0.85[AFR][1000 genomes]
rs2489342	0.88[AFR][1000 genomes]
rs2489345	0.93[AFR][1000 genomes]
rs2489350	0.93[AFR][1000 genomes]
rs2489351	0.91[AFR][1000 genomes]
rs2489356	0.87[AFR][1000 genomes]
rs2489357	0.88[AFR][1000 genomes]
rs2489358	0.88[AFR][1000 genomes]
rs2489360	0.85[AFR][1000 genomes]
rs2501065	0.91[AFR][1000 genomes]
rs2501069	0.93[AFR][1000 genomes]
rs2501074	0.88[AFR][1000 genomes]
rs2501076	0.88[AFR][1000 genomes]
rs2501077	0.88[AFR][1000 genomes]
rs2501079	0.88[AFR][1000 genomes]
rs2501088	0.86[AFR][1000 genomes]
rs2501113	0.80[AFR][1000 genomes]
rs2501117	0.82[AFR][1000 genomes]
rs2501121	0.82[AFR][1000 genomes]
rs2501122	0.82[AFR][1000 genomes]
rs2501128	0.84[AFR][1000 genomes]
rs2501136	0.88[AFR][1000 genomes]
rs2501137	0.86[AFR][1000 genomes]
rs2501144	0.92[AFR][1000 genomes]
rs2501148	0.85[AFR][1000 genomes]
rs2501157	0.93[AFR][1000 genomes]
rs2516334	0.88[AFR][1000 genomes]
rs2929627	0.82[AFR][1000 genomes]
rs2929629	0.85[AFR][1000 genomes]
rs2929632	0.80[AFR][1000 genomes]
rs3128647	0.88[AFR][1000 genomes]
rs6426164	0.86[AFR][1000 genomes]
rs9426147	0.85[AFR][1000 genomes]
rs9426149	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005824	chr1:225114654-225158871	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225133600-225156200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:225134200-225148600	Weak transcription	Pancreas	Pancrea
3	chr1:225134600-225135000	Enhancers	HepG2	liver

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