Variant report

Variant	rs2501089
Chromosome Location	chr1:225098189-225098190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10158926	0.81[AFR][1000 genomes]
rs1110378	0.82[AFR][1000 genomes]
rs1600865	0.84[AFR][1000 genomes]
rs1936631	0.80[AFR][1000 genomes]
rs2406097	0.81[AFR][1000 genomes]
rs2449266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449269	0.82[AFR][1000 genomes]
rs2489296	0.81[AFR][1000 genomes]
rs2489310	0.84[AFR][1000 genomes]
rs2489311	0.82[AFR][1000 genomes]
rs2501082	0.82[AFR][1000 genomes]
rs2501083	0.82[AFR][1000 genomes]
rs2501085	0.82[AFR][1000 genomes]
rs2501087	0.82[AFR][1000 genomes]
rs4484895	1.00[ASN][1000 genomes]
rs55692366	1.00[ASN][1000 genomes]
rs56386111	1.00[ASN][1000 genomes]
rs56981420	1.00[ASN][1000 genomes]
rs57137890	0.81[AFR][1000 genomes]
rs57762550	1.00[ASN][1000 genomes]
rs58253035	1.00[ASN][1000 genomes]
rs58465537	1.00[ASN][1000 genomes]
rs59384753	1.00[ASN][1000 genomes]
rs59420435	0.81[AFR][1000 genomes]
rs60258106	1.00[ASN][1000 genomes]
rs60266138	1.00[ASN][1000 genomes]
rs6426163	0.81[AFR][1000 genomes]
rs6686436	1.00[ASN][1000 genomes]
rs74146288	1.00[ASN][1000 genomes]
rs74146289	1.00[ASN][1000 genomes]
rs74146292	1.00[ASN][1000 genomes]
rs74146297	1.00[ASN][1000 genomes]
rs74146299	1.00[ASN][1000 genomes]
rs74146300	1.00[ASN][1000 genomes]
rs74146620	1.00[ASN][1000 genomes]
rs74146622	1.00[ASN][1000 genomes]
rs74147103	1.00[ASN][1000 genomes]
rs74147105	1.00[ASN][1000 genomes]
rs74147108	1.00[ASN][1000 genomes]
rs74147112	1.00[ASN][1000 genomes]
rs74147113	1.00[ASN][1000 genomes]
rs74147114	1.00[ASN][1000 genomes]
rs74149407	1.00[ASN][1000 genomes]
rs74149408	1.00[ASN][1000 genomes]
rs74149409	1.00[ASN][1000 genomes]
rs74149411	1.00[ASN][1000 genomes]
rs74149412	1.00[ASN][1000 genomes]
rs74149413	1.00[ASN][1000 genomes]
rs74149415	1.00[ASN][1000 genomes]
rs74149424	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225097800-225098600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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