Variant report

Variant	rs2501110
Chromosome Location	chr1:225225177-225225178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1080260	0.93[EUR][1000 genomes]
rs10915779	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10915782	0.85[ASN][1000 genomes]
rs10915783	0.85[ASN][1000 genomes]
rs10915784	0.84[ASN][1000 genomes]
rs10915787	0.85[ASN][1000 genomes]
rs1110378	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1110379	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11588063	0.85[ASN][1000 genomes]
rs12067806	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12075556	0.81[ASN][1000 genomes]
rs12080027	0.85[ASN][1000 genomes]
rs12562045	0.84[ASN][1000 genomes]
rs12563434	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12565737	0.82[ASN][1000 genomes]
rs12565929	0.85[ASN][1000 genomes]
rs1395116	0.90[ASN][1000 genomes]
rs1482280	0.92[JPT][hapmap]
rs1506069	0.89[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506071	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506072	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1506073	0.90[ASN][1000 genomes]
rs1506074	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600531	0.85[ASN][1000 genomes]
rs16843956	0.86[JPT][hapmap]
rs1832540	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1842331	0.85[ASN][1000 genomes]
rs1847908	0.85[ASN][1000 genomes]
rs1847909	0.85[ASN][1000 genomes]
rs1936631	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2014656	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2014667	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2051158	0.80[ASN][1000 genomes]
rs2128268	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2128269	0.91[ASN][1000 genomes]
rs2128270	1.00[CEU][hapmap]
rs2170109	0.85[ASN][1000 genomes]
rs2254158	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2254406	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2405702	0.84[ASN][1000 genomes]
rs2406097	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449256	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2449258	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2449269	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449281	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2449287	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2449303	0.90[ASN][1000 genomes]
rs2449304	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449307	0.91[ASN][1000 genomes]
rs2449308	0.90[ASN][1000 genomes]
rs2449315	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449320	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2449322	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2456328	0.89[ASN][1000 genomes]
rs2456336	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2456341	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2456349	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2456351	0.90[ASN][1000 genomes]
rs2489296	0.81[AMR][1000 genomes]
rs2489298	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489301	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2489303	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2489311	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489313	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2489314	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489324	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2489327	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489337	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2489343	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489346	0.91[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489348	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489352	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489353	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2489355	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2501078	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2501082	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501083	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501085	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501086	0.90[ASN][1000 genomes]
rs2501087	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501099	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2501100	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501101	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501107	0.83[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2501108	0.83[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2501120	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501133	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2501147	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2501151	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2929626	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929628	0.87[ASN][1000 genomes]
rs2939363	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101904	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101906	0.85[ASN][1000 genomes]
rs3101909	0.85[ASN][1000 genomes]
rs3101910	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3101914	0.84[ASN][1000 genomes]
rs3101916	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101917	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102106	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3102108	0.85[ASN][1000 genomes]
rs3102110	0.85[ASN][1000 genomes]
rs3102112	0.85[ASN][1000 genomes]
rs3102113	0.85[ASN][1000 genomes]
rs3102115	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102116	0.85[ASN][1000 genomes]
rs3105551	0.85[ASN][1000 genomes]
rs3105552	0.85[ASN][1000 genomes]
rs3105553	0.85[ASN][1000 genomes]
rs3105554	0.85[ASN][1000 genomes]
rs3105556	0.85[ASN][1000 genomes]
rs3105558	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3105559	0.85[ASN][1000 genomes]
rs3105560	0.83[ASN][1000 genomes]
rs3105561	0.83[ASN][1000 genomes]
rs3105562	0.84[ASN][1000 genomes]
rs3105563	0.84[ASN][1000 genomes]
rs3105564	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3105565	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3105566	0.85[ASN][1000 genomes]
rs3105567	0.85[ASN][1000 genomes]
rs3105568	0.85[ASN][1000 genomes]
rs3105569	0.85[ASN][1000 genomes]
rs3105572	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3120987	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3120989	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3120990	0.85[ASN][1000 genomes]
rs3120991	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3120993	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128643	0.85[ASN][1000 genomes]
rs3128644	0.85[ASN][1000 genomes]
rs3128646	0.85[ASN][1000 genomes]
rs3128649	0.85[ASN][1000 genomes]
rs3128650	0.85[ASN][1000 genomes]
rs3128652	0.83[ASN][1000 genomes]
rs3128653	0.85[ASN][1000 genomes]
rs3128654	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3128655	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3128656	0.83[ASN][1000 genomes]
rs3128657	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3128658	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3128660	0.85[ASN][1000 genomes]
rs3128662	0.83[ASN][1000 genomes]
rs3128664	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128666	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3128667	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3128675	0.85[ASN][1000 genomes]
rs3128676	0.85[ASN][1000 genomes]
rs55764147	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56088855	0.85[ASN][1000 genomes]
rs56339924	0.81[EUR][1000 genomes]
rs61041116	0.85[ASN][1000 genomes]
rs61211002	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61438284	0.81[EUR][1000 genomes]
rs61849768	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6426051	0.83[EUR][1000 genomes]
rs6674717	0.83[ASN][1000 genomes]
rs6683938	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6686694	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6689915	0.83[EUR][1000 genomes]
rs6697382	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6702733	0.83[EUR][1000 genomes]
rs7521702	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7523949	0.86[JPT][hapmap]
rs7530659	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7548138	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs769296	0.83[ASN][1000 genomes]
rs9663018	0.83[ASN][1000 genomes]
rs981067	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs995613	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225205600-225235600	Weak transcription	Pancreas	Pancrea
2	chr1:225211200-225226800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:225215600-225242200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:225223400-225236000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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