Variant report

Variant	rs2503749
Chromosome Location	chr6:81349756-81349757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1902066	0.86[ASN][1000 genomes]
rs2085113	0.84[ASN][1000 genomes]
rs2444813	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444818	0.81[EUR][1000 genomes]
rs2444819	0.82[ASN][1000 genomes]
rs2444820	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2444824	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2496695	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2503726	0.86[ASN][1000 genomes]
rs2503748	0.80[ASN][1000 genomes]
rs2503753	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2503756	0.92[ASN][1000 genomes]
rs2503759	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886314	chr6:81341175-81379791	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81346800-81350600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:81347800-81349800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:81348000-81350600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:81348400-81350200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:81348800-81350600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:81348800-81359800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:81349000-81350600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:81349000-81352600	Weak transcription	Stomach Mucosa	stomach
9	chr6:81349200-81349800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:81349200-81349800	Enhancers	A549	lung
11	chr6:81349200-81351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:81349200-81351400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:81349200-81351400	Weak transcription	NHDF-Ad	bronchial
14	chr6:81349200-81351600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:81349200-81351600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:81349200-81351600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:81349200-81351600	Weak transcription	HSMM	muscle
18	chr6:81349400-81349800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:81349400-81350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:81349400-81351400	Weak transcription	Osteobl	bone
21	chr6:81349600-81349800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:81349600-81351400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links