Variant report
Variant | rs250489 |
---|---|
Chromosome Location | chr5:15973303-15973304 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:15971634..15973484-chr5:15977480..15979036,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10051749 | 0.81[ASN][1000 genomes] |
rs10076986 | 0.82[ASN][1000 genomes] |
rs11133826 | 0.82[ASN][1000 genomes] |
rs12655516 | 0.83[ASN][1000 genomes] |
rs1393266 | 0.81[AFR][1000 genomes] |
rs1502027 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs168747 | 0.83[ASN][1000 genomes] |
rs181833 | 0.92[ASN][1000 genomes] |
rs250488 | 0.85[AFR][1000 genomes] |
rs250490 | 0.85[ASN][1000 genomes] |
rs250496 | 0.92[ASN][1000 genomes] |
rs250497 | 0.92[ASN][1000 genomes] |
rs250498 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs250500 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs250501 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs250503 | 0.83[ASN][1000 genomes] |
rs250504 | 0.83[ASN][1000 genomes] |
rs250505 | 0.81[ASN][1000 genomes] |
rs2599492 | 0.84[ASN][1000 genomes] |
rs2599503 | 0.83[ASN][1000 genomes] |
rs32823 | 0.84[ASN][1000 genomes] |
rs32824 | 0.88[ASN][1000 genomes] |
rs32825 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs32826 | 0.83[ASN][1000 genomes] |
rs32827 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs32828 | 0.82[ASN][1000 genomes] |
rs32829 | 0.83[ASN][1000 genomes] |
rs32830 | 0.83[ASN][1000 genomes] |
rs4701645 | 0.81[ASN][1000 genomes] |
rs4701646 | 0.81[ASN][1000 genomes] |
rs4702120 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830216 | chr5:15860662-16060420 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv427712 | chr5:15883439-16055856 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:15970400-15981000 | Weak transcription | Right Ventricle | heart |